@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : MKNK2_HUMAN: (2013-07-23 )
MVQKKPAELQGFHRSFKGQNPFELAFSLDQPDHGDSDFGLQCSARPDMPASQPIDIPDAKKRGKKKKRGRATDSFSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPENTLPTPMVLQRNSCAKDLTSFAAEAIAMNRQLAQHDEDLAEEEAAGQGQPVLVRATSRCLQLSPPSQSKLAQRRQRASLSSAPVVLVGDHA

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_A_7(2VN9)
KCC2D_HUMAN
[Raw transfer]




ANP_A_5(3IGO)
?
[Raw transfer]




STU_A_3(2HW7)
MKNK2_HUMAN
[Raw transfer]




BK3_A_2(3N51)
?
[Raw transfer]




VGG_A_2(2WEI)
?
[Raw transfer]




BK1_A_5(3NCG)
?
[Raw transfer]




BK1_A_2(3I7B)
?
[Raw transfer]




BK3_A_6(3MWU)
?
[Raw transfer]




5CP_B_6(3BHH)
KCC2B_HUMAN
[Raw transfer]




BK5_A_2(3SXF)
?
[Raw transfer]




ANP_A_3(3KN5)
KS6A5_HUMAN
[Raw transfer]




GVD_B_8(2VN9)
KCC2D_HUMAN
[Raw transfer]




K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]




BK6_A_2(3T3U)
?
[Raw transfer]




DXR_B_4(3MA6)
?
[Raw transfer]




5CP_A_5(3BHH)
KCC2B_HUMAN
[Raw transfer]




BK2_A_2(3I7C)
?
[Raw transfer]




DXR_A_3(3MA6)
?
[Raw transfer]




ANP_A_2(3MFS)
CSKP_HUMAN
[Raw transfer]




ANP_A_8(3Q5I)
?
[Raw transfer]




ANP_A_2(3MFU)
CSKP_HUMAN
[Raw transfer]




ANP_B_4(3KN5)

[Raw transfer]




B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]




B49_A_5(2Y7J)
PHKG2_HUMAN
[Raw transfer]




DRN_A_2(2V7O)
KCC2G_HUMAN
[Raw transfer]




DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]




ANP_A_2(3MFR)
CSKP_HUMAN
[Raw transfer]




DB8_A_2(3SOA)
KCC2A_HUMAN
[Raw transfer]




EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]




EDO_B_8(2JAM)
KCC1G_HUMAN
[Raw transfer]




EDO_A_5(2JAM)
KCC1G_HUMAN
[Raw transfer]




EDO_A_6(2WEL)
KCC2D_HUMAN
[Raw transfer]




EDO_A_3(3I7B)
?
[Raw transfer]




3 PsiBlast_PDB 93.0599%-132 - C1 -2HW7 8.7 MKNK2_HUMAN
48 PsiBlast_CBE 65.8436%-114 - C1 -3MFR 4.4 CSKP_HUMAN
47 PsiBlast_CBE 65.0336%-114 - C1 -3MFS 3.9 CSKP_HUMAN
46 PsiBlast_CBE 64.4136%-114 - C1 -3MFU 4.0 CSKP_HUMAN
20 PsiBlast_PDB 63.2136%-115 - C1 -3I7C 6.3 ?
5 PsiBlast_PDB 62.7136%-104 - C1 -3MWU 2.8 ?
6 PsiBlast_PDB 62.3236%-105 - C1 -3NCG 2.8 ?
4 PsiBlast_PDB 62.2136%-103 - C1 -3IGO 6.1 ?
16 PsiBlast_PDB 61.9436%-114 - C1 -3T3U 3.8 ?
13 PsiBlast_PDB 61.5736%-112 - C1 -3I7B 6.2 ?
14 PsiBlast_PDB 61.4736%-113 - C1 -3N51 2.2 ?
22 PsiBlast_CBE 61.4036%-115 - C1 -3MA6 5.9 ?
142 HHSearch 61.2532% -94 - C1 -3Q5I 3.9 ?
15 PsiBlast_PDB 61.2036%-111 - C1 -3SXF 2.7 ?
17 PsiBlast_PDB 60.7236%-115 - C1 -3MA6 4.1 ?
42 PsiBlast_CBE 60.5336%-108 - C1 -3BHH 6.1 KCC2B_HUMAN
50 PsiBlast_CBE 59.6934%-104 - C1 -2V7O 5.0 KCC2G_HUMAN
41 PsiBlast_CBE 59.6236%-109 - C1 -3BHH 6.2 KCC2B_HUMAN
49 PsiBlast_CBE 59.2234%-110 - C1 -3SOA 5.0 KCC2A_HUMAN
36 PsiBlast_CBE 59.2135%-107 - C1 -2WEL 5.7 KCC2D_HUMAN
51 PsiBlast_CBE 59.1834%-112 - C1 -2W4O 5.3 KCC4_HUMAN
45 PsiBlast_CBE 58.8534%-108 - C1 -2Y7J 6.3 PHKG2_HUMAN
44 PsiBlast_CBE 58.4734%-107 - C1 -2Y7J 5.7 PHKG2_HUMAN
8 PsiBlast_PDB 58.3837% -99 - C1 -2WEI 6.6 ?
39 PsiBlast_CBE 58.3235%-102 - C1 -2VN9 6.0 KCC2D_HUMAN
29 PsiBlast_CBE 58.3134%-106 - C1 -3KN5 4.2 KS6A5_HUMAN
40 PsiBlast_CBE 57.7535%-102 - C1 -2VN9 5.8 KCC2D_HUMAN
28 PsiBlast_CBE 55.7234% -97 - C1 -3KN5 3.9
31 PsiBlast_CBE 55.5238%-107 - C1 -2JAM 2.1 KCC1G_HUMAN
24 PsiBlast_CBE 55.0035%-100 - C1 -2WNT -
30 PsiBlast_CBE 53.9738%-104 - C1 -2JAM 3.7 KCC1G_HUMAN