@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NEK2_HUMAN: (2013-07-23 )
MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLIADLVADEQRRNLERRGRQLGEPEKSQDSSPVLSELKLKEIQLQERERALKAREERLEQKEQELCVRERLAEDKLARAENLLKNYSLLKERKFLSLASNPELLNLPSSVIKKKVHFSGESKENIMRSENSESQLTSKSKCKDLKKRLHAAQLRAQALSDIEKNYQLKSRQILGMR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




GOL_A_12(3IGO)
?
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




14 PsiBlast_PDB 94.73100%-117 - C1 -2XNO 6.6 NEK2_HUMAN
10 PsiBlast_PDB 94.15100%-123 - C1 -2XKF 6.5 NEK2_HUMAN
12 PsiBlast_PDB 93.49100%-118 - C1 -2XNM 7.7 NEK2_HUMAN
11 PsiBlast_PDB 92.89100%-125 - C1 -2XKE 6.4 NEK2_HUMAN
16 PsiBlast_PDB 92.2499%-127 - C1 -2JAV 6.6 NEK2_HUMAN
2 PsiBlast_PDB 92.21100%-124 - C1 -2WQO 7.3 NEK2_HUMAN
17 PsiBlast_PDB 92.2099%-117 - C1 -2W5B 5.0 NEK2_HUMAN
6 PsiBlast_PDB 92.01100%-122 - C1 -2XK7 6.4 NEK2_HUMAN
7 PsiBlast_PDB 91.77100%-124 - C1 -2XK8 6.9 NEK2_HUMAN
5 PsiBlast_PDB 91.49100%-125 - C1 -2XK6 6.4 NEK2_HUMAN
9 PsiBlast_PDB 91.17100%-121 - C1 -2XKD 6.7 NEK2_HUMAN
8 PsiBlast_PDB 90.54100%-118 - C1 -2XKC 6.7 NEK2_HUMAN
1 PsiBlast_PDB 89.73100%-120 - C1 -2W5A 6.3 NEK2_HUMAN
3 PsiBlast_PDB 89.67100%-120 - C1 -2XK3 6.1 NEK2_HUMAN
15 PsiBlast_PDB 89.34100%-116 - C1 -2XNP 9.7 NEK2_HUMAN
4 PsiBlast_PDB 89.15100%-118 - C1 -2XK4 7.3 NEK2_HUMAN
13 PsiBlast_PDB 88.23100%-113 - C1 -2XNN 6.4 NEK2_HUMAN
132 HHSearch 66.3741%-103 - C1 -4B9D 4.8 NEK1_HUMAN
21 PsiBlast_CBE 64.9441%-107 - C1 -4B9D 6.1 NEK1_HUMAN
27 PsiBlast_CBE 60.8231%-108 - C1 -3IGO 2.3 ?
80 PsiBlast_CBE 54.1032%-104 - C1 -3HZT - ?