@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NEK4_HUMAN: (2013-07-23 )
MPLAAYCYLRVVGKGSYGEVTLVKHRRDGKQYVIKKLNLRNASSRERRAAEQEAQLLSQLKHPNIVTYKESWEGGDGLLYIVMGFCEGGDLYRKLKEQKGQLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPRDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKRQISFFLEATKIKTSKNNIKNGDSQSKPFATVVSGEAESNHEVIHPQPLSSEGSQTYIMGEGKCLSQEKPRASGLLKSPASLKAHTCKQDLSNTTELATISSVNIDILPAKGRDSVSDGFVQENQPRYLDASNELGGICSISQVEEEMLQDNTKSSAQPENLIPMWSSDIVTGEKNEPVKPLQPLIKEQKPKDQSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGITGVCHHAQDQVAGECIIEKQGRIHPDLQPHNSGSEPSLSRQRRQKRREQTEHRGEKRQVRRDLFAFQESPPRFLPSHPIVGKVDVTSTQKEAENQRRVVTGSVSSSRSSEMSSSKDRPLSARERRRLKQSQEEMSSSGPSVRKASLSVAGPGKPQEEDQPLPARRLSSDCSVTQERKQIHCLSEDELSSSTSSTDKSDGDYGEGKGQTNEINALVQLMTQTLKLDSKESCEDVPVANPVSEFKLHRKYRDTLILHGKVAEEAEEIHFKELPSAIMPGSEKIRRLVEVLRTDVIRGLGVQLLEQVYDLLEEEDEFDREVRLREHMGEKYTTYSVKARQLKFFEENMNF

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




AGS_A_2(3ORP)
?
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




GOL_A_12(3HX4)
?
[Raw transfer]




ADP_A_6(3C4Z)
RK_BOVIN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




ANP_A_7(2ACX)
GRK6_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




ACP_A_3(2Z7Q)
KS6A1_HUMAN
[Raw transfer]




LWH_A_2(2XM9)
CHK2_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




A9T_A_2(4A9T)
CHK2_HUMAN
[Raw transfer]




A9U_A_4(4A9U)
CHK2_HUMAN
[Raw transfer]




ANP_C_10(2A19)
E2AK2_HUMAN
[Raw transfer]




21 PsiBlast_CBE 81.7250%-109 - C1 -4B9D 4.8 NEK1_HUMAN
105 HHSearch 77.5044%-101 - C1 -4B9D 5.6 NEK1_HUMAN
11 PsiBlast_PDB 72.4040%-112 - C1 -2XKD 6.9 NEK2_HUMAN
3 PsiBlast_PDB 71.9540%-111 - C1 -2W5A 5.4 NEK2_HUMAN
12 PsiBlast_PDB 71.8340%-110 - C1 -2XKF 6.1 NEK2_HUMAN
19 PsiBlast_PDB 71.6640%-103 - C1 -2W5B 4.7 NEK2_HUMAN
8 PsiBlast_PDB 71.6540%-109 - C1 -2XK7 6.3 NEK2_HUMAN
7 PsiBlast_PDB 71.5140%-109 - C1 -2XK6 6.5 NEK2_HUMAN
9 PsiBlast_PDB 71.1640%-109 - C1 -2XK8 6.5 NEK2_HUMAN
18 PsiBlast_PDB 71.0540%-111 - C1 -2JAV 6.3 NEK2_HUMAN
14 PsiBlast_PDB 70.6240%-106 - C1 -2XNM 8.1 NEK2_HUMAN
17 PsiBlast_PDB 70.5540%-104 - C1 -2XNP 9.0 NEK2_HUMAN
13 PsiBlast_PDB 70.5340%-114 - C1 -2XKE 6.5 NEK2_HUMAN
16 PsiBlast_PDB 70.1240%-103 - C1 -2XNO 6.5 NEK2_HUMAN
10 PsiBlast_PDB 69.6740%-103 - C1 -2XKC 6.7 NEK2_HUMAN
4 PsiBlast_PDB 69.6340%-109 - C1 -2WQO 7.3 NEK2_HUMAN
5 PsiBlast_PDB 69.1840%-107 - C1 -2XK3 6.4 NEK2_HUMAN
6 PsiBlast_PDB 68.7440%-106 - C1 -2XK4 6.9 NEK2_HUMAN
15 PsiBlast_PDB 67.0440%-101 - C1 -2XNN 6.7 NEK2_HUMAN
46 PsiBlast_CBE 62.4032%-106 - C1 -3HX4 4.3 ?
71 PsiBlast_CBE 58.6931%-101 - C1 -2XM9 6.0 CHK2_HUMAN
67 PsiBlast_CBE 57.7431%-102 - C1 -4A9U 3.3 CHK2_HUMAN
68 PsiBlast_CBE 57.2631% -97 - C1 -4A9T 3.7 CHK2_HUMAN
37 PsiBlast_CBE 50.5631% -97 - C1 -2Z7Q 5.9 KS6A1_HUMAN
23 PsiBlast_CBE 49.3632%-105 - C1 -2A19 4.1 E2AK2_HUMAN
87 PsiBlast_CBE 49.2431% -63 - C1 -3ORP 6.7 ?