@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PAK4_HUMAN: (2013-07-24 )
MFGKRKKRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESARRPKPLVDPACITSIQPGAPKTIVRGSKGAKDGALTLLLDEFENMSVTRSNSLRRDSPPPPARARQENGMPEEPATTARGGPGKAGSRGRFAGHSEAGGGSGDRRRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_6(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4FIG)
?
[Raw transfer]



ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4FIE)
PAK4_HUMAN
[Raw transfer]



ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



ANP_B_6(4FIG)
?
[Raw transfer]



DKI_B_3(4FZF)
?
[Raw transfer]



IE6_A_4(4BIE)
?
[Raw transfer]



GOL_B_3(4FZA)
MST4_HUMAN
[Raw transfer]



23D_A_2(2CDZ)
PAK4_HUMAN
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



23D_B_5(2F57)

[Raw transfer]



GOL_B_4(4FZA)
MST4_HUMAN
[Raw transfer]



0WB_A_2(4G3F)

[Raw transfer]



ANP_A_4(3Q4Z)
PAK1_HUMAN
[Raw transfer]



DW1_A_2(3FY0)
PAK1_HUMAN
[Raw transfer]



ANP_A_2(3MFR)
CSKP_HUMAN
[Raw transfer]



EDO_A_9(2Q0N)
PAK4_HUMAN
[Raw transfer]



EDO_A_5(2J0I)
PAK4_HUMAN
[Raw transfer]



TRS_A_4(2F57)
PAK7_HUMAN
[Raw transfer]
86 HHSearch 92.12100%-123 - C1 -4FIE 5.7 PAK4_HUMAN
12 PsiBlast_PDB 85.1784%-135 - C1 -2F57 4.0 PAK7_HUMAN
8 PsiBlast_PDB 84.6499%-132 - C1 -2J0I 3.5 PAK4_HUMAN
6 PsiBlast_PDB 83.6499%-128 - C1 -2Q0N 2.5 PAK4_HUMAN
7 PsiBlast_PDB 83.4299%-131 - C1 -2CDZ 6.5 PAK4_HUMAN
2 PsiBlast_PDB 82.1899%-128 - C1 -4FIG 6.5 ?
1 PsiBlast_PDB 81.2199%-125 - C1 -4FIF 5.9 PAK4_HUMAN
18 PsiBlast_PDB 72.8153%-133 - C1 -3FXZ 7.0 ?
19 PsiBlast_PDB 70.4753%-132 - C1 -3FY0 5.3 PAK1_HUMAN
16 PsiBlast_PDB 68.5952%-132 - C1 -3Q4Z 5.8 PAK1_HUMAN
22 PsiBlast_CBE 65.2799%-104 - C1 -4FIF 6.0 PAK4_HUMAN
21 PsiBlast_CBE 63.2099%-101 - C1 -4FIG 5.9 ?
23 PsiBlast_CBE 62.9284%-104 - C1 -2F57 5.5
34 PsiBlast_CBE 54.0537%-110 - C1 -4FZA 2.5 MST4_HUMAN
54 PsiBlast_CBE 52.8831%-123 - C1 -4BIE 4.4 ?
32 PsiBlast_CBE 48.1637%-112 - C1 -4FZF 5.9 ?
69 PsiBlast_CBE 47.5031%-120 - C1 -3MFR 3.9 CSKP_HUMAN