@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : RET_HUMAN: (2015-06-18 )
MAKATSGAAGLRLLLLLLLPLLGKVALGLYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWICIQEDTGLLYLNRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPNISVAYRLLEGEGLPFRCAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPTFPAGVDTASAVVEFKRKEDTVVATLRVFDADVVPASGELVRRYTSTLLPGDTWAQQTFRVEHWPNETSVQANGSFVRATVHDYRLVLNRNLSISENRTMQLAVLVNDSDFQGPGAGVLLLHFNVSVLPVSLHLPSTYSLSVSRRARRFAQIGKVCVENCQAFSGINVQYKLHSSGANCSTLGVVTSAEDTSGILFVNDTKALRRPKCAELHYMVVATDQQTSRQAQAQLLVTVEGSYVAEEAGCPLSCAVSKRRLECEECGGLGSPTGRCEWRQGDGKGITRNFSTCSPSTKTCPDGHCDVVETQDINICPQDCLRGSIVGGHEPGEPRGIKAGYGTCNCFPEEEKCFCEPEDIQDPLCDELCRTVIAAAVLFSFIVSVLLSAFCIHCYHKFAHKPPISSAEMTFRRPAQAFPVSYSSSGARRPSLDSMENQVSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYLDLAASTPSDSLIYDDGLSEEETPLVDCNNAPLPRALPSTWIENKLYGMSDPNWPGESPVPLTRADGTNTGFPRYPNDSVYANWMLSPSAAKLMDTFDS

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2K7_A_7(4NKA)
FGFR1_HUMAN
[Raw transfer]




X2M_A_5(2X2M)
RET_HUMAN
[Raw transfer]




X2L_A_6(2X2L)

[Raw transfer]




ACP_A_5(2PVF)

[Raw transfer]




0S7_B_6(4F63)

[Raw transfer]




GQL_C_6(3GQL)

[Raw transfer]




SU1_B_3(1FGI)

[Raw transfer]




ACP_A_4(3CLY)
FGFR2_HUMAN
[Raw transfer]




AAX_B_2(1Y6B)

[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




PP1_A_3(2IVV)

[Raw transfer]




GQL_A_4(3GQL)
FGFR1_HUMAN
[Raw transfer]




SU2_B_3(1AGW)

[Raw transfer]




ACK_A_6(2IVS)
RET_HUMAN
[Raw transfer]




PD1_C_3(2FGI)

[Raw transfer]




3RH_B_3(3RHX)

[Raw transfer]




ZD6_A_4(2IVU)

[Raw transfer]




8ST_A_2(3HNG)

[Raw transfer]




ACP_D_12(4J95)
?
[Raw transfer]




ACK_A_6(2IVS)
RET_HUMAN
[Raw transfer]




0VF_A_2(4FYO)

[Raw transfer]




0S8_B_7(4F64)

[Raw transfer]




0S8_A_3(4F64)
FGFR1_HUMAN
[Raw transfer]




V4Z_A_4(4AOJ)
NTRK1_HUMAN
[Raw transfer]




2 PsiBlast_PDB 89.8899% -99 - C1 -2IVU 7.9
4 PsiBlast_PDB 89.0599%-104 - C1 -2X2M 6.2 RET_HUMAN
6 PsiBlast_PDB 87.7099% -99 - C1 -2IVV 6.5
3 PsiBlast_PDB 87.3799%-103 - C1 -2X2L 6.1
124 HHSearch 86.97100% -98 - C1 -2IVS 5.5 RET_HUMAN
40 PsiBlast_CBE 72.3353%-101 - C1 -4F64 2.3 FGFR1_HUMAN
108 PsiBlast_CBE 70.4043%-102 - C1 -1Y6B 8.1
60 PsiBlast_CBE 70.3851%-102 - C1 -4J95 4.7 ?
28 PsiBlast_CBE 70.3753% -99 - C1 -1FGI 6.7
34 PsiBlast_CBE 70.3253% -97 - C1 -4NKA 7.6 FGFR1_HUMAN
21 PsiBlast_CBE 69.3852% -99 - C1 -3GQL 6.4
29 PsiBlast_CBE 69.2853% -98 - C1 -1AGW 6.0
27 PsiBlast_CBE 68.3253% -98 - C1 -2FGI 8.8
130 HHSearch 65.3438% -87 - C1 -3CBL 8.3
122 HHSearch 63.6538% -94 - C1 -4AOJ 5.8 NTRK1_HUMAN
125 HHSearch 62.7839% -94 - C1 -4FYO 6.9