@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SRPK1_HUMAN: (2015-06-18 )
MERKVLALQARKKRTKAKKDKAQRKSETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPNDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPQPKPADKMSKNKKKKLKKKQKRQAELLEKRMQEIEEMEKESGPGQKRPNKQEESESPVERPLKENPPNKMTQEKLEESSTIGQDQTLMERDTEGGAAEINCNGVIEVINYTQNSNNETLRHKEDLHNANDCDVQNLNQESSFLSSQNGDSSTSQETDSCTPITSEVSDTMVCQSSSTVGQSFSEQHISQLQESIRAEIPCEDEQEQEHNGPLDNKGKSTAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]
117 HHSearch 99.60100%-128 - C1 -1WAK - SRPK1_HUMAN -
119 HHSearch 72.3631%-112 - C1 -2VX3 - DYR1A_HUMAN -
121 HHSearch 70.6639%-103 - C1 -3KVW - DYRK2_HUMAN -
120 HHSearch 67.8832% -93 - C1 -2EU9 - CLK3_HUMAN -
123 HHSearch 63.2134% -98 - C1 -3LLT - ? -
122 HHSearch 62.3531% -88 - C1 -1Z57 - CLK1_HUMAN -
132 HHSearch 61.1430%-107 * C1 *3NIZ - ? -
127 HHSearch 60.9228%-106 - C1 -3TTJ - MK10_HUMAN -
133 HHSearch 60.6529%-105 - C1 -4BGQ - CDKL5_HUMAN -
128 HHSearch 60.4029% -99 - C1 -4AU8 - CDK5_HUMAN -
1 PsiBlast_PDB 59.9471%-106 - C2 -2X7G - SRPK2_HUMAN -
124 HHSearch 59.8629%-106 - C1 -3ZDU 5.7 CDKL3_HUMAN
126 HHSearch 58.1332%-103 - C1 -3G33 - CDK4_HUMAN -
131 HHSearch 57.4329% -91 - C1 -3O0G - CDK5_HUMAN -
135 HHSearch 57.2425% -95 - C1 -4F6U - CDK8_HUMAN -
138 HHSearch 55.7325%-100 - C1 -3RGF - CDK8_HUMAN -
36 PsiBlast_CBE 52.1032%-121 - C2 -2WO6 - DYR1A_HUMAN -
42 PsiBlast_CBE 52.0332%-128 - C2 -4MQ2 - DYR1A_HUMAN -
51 PsiBlast_CBE 51.5532%-116 - C2 -4AZE - DYR1A_HUMAN -
43 PsiBlast_CBE 51.5032%-130 - C2 -4MQ2 - DYR1A_HUMAN -