@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : ALPK1_HUMAN: (2015-10-03 )
MNNQKVVAVLLQECKQVLDQLLLEAPDVSEEDKSEDQRCRALLPSELRTLIQEAKEMKWPFVPEKWQYKQAVGPEDKTNLKDVIGAGLQQLLASLRASILARDCAAAAAIVFLVDRFLYGLDVSGKLLQVAKGLHKLQPATPIAPQVVIRQARISVNSGKLLKAEYILSSLISNNGATGTWLYRNESDKVLVQSVCIQIRGQILQKLGMWYEAAELIWASIVGYLALPQPDKKGLSTSLGILADIFVSMSKNDYEKFKNNPQINLSLLKEFDHHLLSAAEACKLAAAFSAYTPLFVLTAVNIRGTCLLSYSSSNDCPPELKNLHLCEAKEAFEIGLLTKRDDEPVTGKQELHSFVKAAFGLTTVHRRLHGETGTVHAASQLCKEAMGKLYNFSTSSRSQDREALSQEVMSVIAQVKEHLQVQSFSNVDDRSYVPESFECRLDKLILHGQGDFQKILDTYSQHHTSVCEVFESDCGNNKNEQKDAKTGVCITALKTEIKNIDTVSTTQEKPHCQRDTGISSSLMGKNVQRELRRGGRRNWTHSDAFRVSLDQDVETETEPSDYSNGEGAVFNKSLSGSQTSSAWSNLSGFSSSASWEEVNYHVDDRSARKEPGKEHLVDTQCSTALSEELENDREGRAMHSLHSQLHDLSLQEPNNDNLEPSQNQPQQQMPLTPFSPHNTPGIFLAPGAGLLEGAPEGIQEVRNMGPRNTSAHSRPSYRSASWSSDSGRPKNMGTHPSVQKEEAFEIIVEFPETNCDVKDRQGKEQGEEISERGAGPTFKASPSWVDPEGETAESTEDAPLDFHRVLHNSLGNISMLPCSSFTPNWPVQNPDSRKSGGPVAEQGIDPDASTVDEEGQLLDSMDVPCTNGHGSHRLCILRQPPGQRAETPNSSVSGNILFPVLSEDCTTTEEGNQPGNMLNCSQNSSSSSVWWLKSPAFSSGSSEGDSPWSYLNSSGSSWVSLPGKMRKEILEARTLQPDDFEKLLAGVRHDWLFQRLENTGVFKPSQLHRAHSALLLKYSKKSELWTAQETIVYLGDYLTVKKKGRQRNAFWVHHLHQEEILGRYVGKDYKEQKGLWHHFTDVERQMTAQHYVTEFNKRLYEQNIPTQIFYIPSTILLILEDKTIKGCISVEPYILGEFVKLSNNTKVVKTEYKATEYGLAYGHFSYEFSNHRDVVVDLQGWVTGNGKGLIYLTDPQIHSVDQKVFTTNFGKRGIFYFFNNQHVECNEICHRLSLTRPSMEKPCT

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(1IA9)
TRPM7_MOUSE
[Raw transfer]



ATP_A_8(3LMI)
MHCKA_DICDI
[Raw transfer]



ATP_D_22(3LMI)

[Raw transfer]



ATP_B_13(3LMI)
MHCKA_DICDI
[Raw transfer]



ATP_B_8(4ZS4)
?
[Raw transfer]



ATP_C_17(3LMI)
MHCKA_DICDI
[Raw transfer]



AMP_A_8(3LKM)

[Raw transfer]



ADP_A_6(3PDT)

[Raw transfer]



ATP_A_5(4ZS4)
?
[Raw transfer]



ACP_A_4(3LLA)
MHCKA_DICDI
[Raw transfer]



ACP_B_7(3LLA)

[Raw transfer]



AMP_A_3(4ZMF)
?
[Raw transfer]



ADN_A_4(4ZME)
?
[Raw transfer]



AMP_B_6(4ZMF)
?
[Raw transfer]



ADN_B_8(4ZME)
?
[Raw transfer]



ADP_A_4(4NL0)
?
[Raw transfer]



PEG_A_4(4KUJ)
?
[Raw transfer]
8 PsiBlast_PDB 75.2533% -16 - C3 -3LMI 5.0 MHCKA_DICDI
18 PsiBlast_CBE 73.0533% -15 - C3 -3LMI 5.3 MHCKA_DICDI
17 PsiBlast_CBE 72.5233% -19 - C3 -3LMI 4.9
7 PsiBlast_PDB 72.1933% -22 - C3 -4ZMF 4.6 ?
3 PsiBlast_PDB 71.0433% -17 - C3 -3PDT 5.0
6 PsiBlast_PDB 70.8133% -18 - C3 -4ZME 4.4 ?
2 PsiBlast_PDB 70.6133% -17 - C3 -3LLA 4.8 MHCKA_DICDI
19 PsiBlast_CBE 70.5033% -17 - C3 -3LMI 4.7 MHCKA_DICDI
15 PsiBlast_CBE 70.2232% -10 - C3 -4ZME 4.4 ?
14 PsiBlast_CBE 70.0732% -10 - C3 -4ZMF 4.5 ?
13 PsiBlast_CBE 70.0633% -16 - C3 -3LLA 4.8
1 PsiBlast_PDB 70.0533% -14 - C3 -3LKM 4.9
9 PsiBlast_PDB 69.9933% -17 - C3 -4ZS4 4.9 ?
16 PsiBlast_CBE 69.8333% -19 * C3 *4ZS4 5.3 ?