@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : AVR2A_HUMAN: (2015-10-03 )
MGAAAKLAFAVFLISCSSGAILGRSETQECLFFNANWEKDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCVEKKDSPEVYFCCCEGNMCNEKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLMLIAGIVICAFWVYRHHKMAYPPVLVPTQDPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLTNIITTEDIVTVVTMVTNVDFPPKESSL

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_B_10(3SOC)
AVR2A_HUMAN
[Raw transfer]




QIG_A_2(3GXL)
TGFR1_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




ZZG_A_2(2WOT)
TGFR1_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




IYZ_A_4(4DYM)
ACVR1_HUMAN
[Raw transfer]




855_A_2(3HMM)
TGFR1_HUMAN
[Raw transfer]




LDN_B_13(3Q4U)
ACVR1_HUMAN
[Raw transfer]




LDN_C_6(3MDY)
BMR1B_HUMAN
[Raw transfer]




GOL_A_6(4DYM)
ACVR1_HUMAN
[Raw transfer]




LDN_C_20(3Q4U)
ACVR1_HUMAN
[Raw transfer]




TAK_A_3(3Q4T)
AVR2A_HUMAN
[Raw transfer]




TAK_B_17(3Q4T)
AVR2A_HUMAN
[Raw transfer]




PY1_C_3(1PY5)
TGFR1_HUMAN
[Raw transfer]




085_A_2(3TZM)
TGFR1_HUMAN
[Raw transfer]




LDN_A_5(3MDY)
BMR1B_HUMAN
[Raw transfer]




LDN_A_5(3Q4U)
ACVR1_HUMAN
[Raw transfer]




507_A_4(3OOM)
ACVR1_HUMAN
[Raw transfer]




3WN_A_2(4X2J)
TGFR1_HUMAN
[Raw transfer]




ZZF_A_3(2WOU)
TGFR1_HUMAN
[Raw transfer]




LDN_A_5(3Q4U)
ACVR1_HUMAN
[Raw transfer]




3WO_A_2(4X2K)
TGFR1_HUMAN
[Raw transfer]




LDN_A_5(3MDY)
BMR1B_HUMAN
[Raw transfer]




844_A_5(4BGG)
ACVR1_HUMAN
[Raw transfer]




844_B_10(4BGG)
ACVR1_HUMAN
[Raw transfer]




GOL_A_8(4DYM)
ACVR1_HUMAN
[Raw transfer]




STI_A_3(4BKJ)
DDR1_HUMAN
[Raw transfer]




844_C_14(4BGG)
ACVR1_HUMAN
[Raw transfer]




6OJ_B_8(4ASX)
AVR2A_HUMAN
[Raw transfer]




844_D_16(4BGG)
ACVR1_HUMAN
[Raw transfer]




6OJ_A_3(4ASX)
AVR2A_HUMAN
[Raw transfer]




A3F_A_17(3MTF)
ACVR1_HUMAN
[Raw transfer]




580_B_2(1RW8)
TGFR1_HUMAN
[Raw transfer]




TAK_A_10(4C02)
ACVR1_HUMAN
[Raw transfer]




TAK_A_3(3H9R)
ACVR1_HUMAN
[Raw transfer]




3WK_A_2(4X2G)
?
[Raw transfer]




T12_A_7(2NRU)
IRAK4_HUMAN
[Raw transfer]




3WA_A_2(4X0M)
TGFR1_HUMAN
[Raw transfer]




ADE_A_4(2QLU)
AVR2B_HUMAN
[Raw transfer]




TRS_A_4(4X2G)
?
[Raw transfer]




23 PsiBlast_CBE 97.39100%-106 - C2 -3Q4T 7.0 AVR2A_HUMAN
22 PsiBlast_CBE 96.64100%-105 - C2 -3SOC 7.5 AVR2A_HUMAN
21 PsiBlast_CBE 95.67100%-101 - C2 -4ASX 5.6 AVR2A_HUMAN
3 PsiBlast_PDB 95.56100%-106 - C2 -4ASX 5.7 AVR2A_HUMAN
1 PsiBlast_PDB 93.88100% -99 - C2 -3Q4T 7.8 AVR2A_HUMAN
2 PsiBlast_PDB 93.23100% -98 - C2 -3SOC 7.0 AVR2A_HUMAN
143 HHSearch 92.8597% -96 - C2 -3SOC 7.0 AVR2A_HUMAN
4 PsiBlast_PDB 85.3576%-101 - C2 -2QLU 3.1 AVR2B_HUMAN
11 PsiBlast_PDB 74.5340% -94 - C2 -4X2G 4.0 ?
43 PsiBlast_CBE 74.0140% -93 - C2 -4X0M 3.4 TGFR1_HUMAN
42 PsiBlast_CBE 73.9440% -94 - C2 -4X2J 5.6 TGFR1_HUMAN
41 PsiBlast_CBE 73.9440% -94 - C2 -4X2K 5.6 TGFR1_HUMAN
14 PsiBlast_PDB 72.8040% -93 - C2 -2WOT 9.0 TGFR1_HUMAN
19 PsiBlast_PDB 72.5040% -93 - C2 -3H9R 4.8 ACVR1_HUMAN
8 PsiBlast_PDB 71.7640% -94 - C2 -3TZM 7.7 TGFR1_HUMAN
49 PsiBlast_CBE 71.7040% -85 - C2 -4BGG 7.2 ACVR1_HUMAN
20 PsiBlast_PDB 71.5040% -89 - C2 -4C02 7.1 ACVR1_HUMAN
15 PsiBlast_PDB 71.4940% -94 - C2 -2WOU 6.6 TGFR1_HUMAN
51 PsiBlast_CBE 71.4240% -81 - C2 -3Q4U 8.7 ACVR1_HUMAN
53 PsiBlast_CBE 71.3240% -84 - C2 -3Q4U 8.6 ACVR1_HUMAN
48 PsiBlast_CBE 71.3140% -87 * C2 *4BGG 7.4 ACVR1_HUMAN
47 PsiBlast_CBE 71.2440% -88 - C2 -4BGG 7.1 ACVR1_HUMAN
9 PsiBlast_PDB 71.2240% -91 - C2 -3GXL 7.9 TGFR1_HUMAN
145 HHSearch 71.0840% -90 - C2 -3Q4U 8.6 ACVR1_HUMAN
12 PsiBlast_PDB 71.0140% -94 - C2 -1RW8 7.3 TGFR1_HUMAN
16 PsiBlast_PDB 70.8840% -98 - C2 -3MDY 8.6 BMR1B_HUMAN
44 PsiBlast_CBE 70.7740% -96 - C2 -3MDY 8.1 BMR1B_HUMAN
10 PsiBlast_PDB 70.7540% -95 - C2 -3HMM 8.4 TGFR1_HUMAN
52 PsiBlast_CBE 70.7140% -87 - C2 -3Q4U 8.6 ACVR1_HUMAN
56 PsiBlast_CBE 70.5840% -82 - C2 -3MTF 7.0 ACVR1_HUMAN
57 PsiBlast_CBE 70.5040% -84 - C2 -4DYM 6.4 ACVR1_HUMAN
144 HHSearch 69.9341% -95 - C2 -3MDY 8.6 BMR1B_HUMAN
46 PsiBlast_CBE 69.5840% -87 - C2 -4BGG 7.3 ACVR1_HUMAN
54 PsiBlast_CBE 69.4740% -83 - C2 -3OOM 6.7 ACVR1_HUMAN
13 PsiBlast_PDB 68.6440% -90 - C2 -1PY5 6.2 TGFR1_HUMAN
158 HHSearch 61.5934% -96 - C2 -2NRU 4.4 IRAK4_HUMAN
161 HHSearch 50.2530% -84 - C2 -4BKJ 7.6 DDR1_HUMAN