@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : EF2K_HUMAN: (2015-10-06 )
MADEDLIFRLEGVDGGQSPRAGHDGDSDGDSDDEEGYFICPITDDPSSNQNVNSKVNKYYSNLTKSERYSSSGSPANSFHFKEAWKHAIQKAKHMPDPWAEFHLEDIATERATRHRYNAVTGEWLDDEVLIKMASQPFGRGAMRECFRTKKLSNFLHAQQWKGASNYVAKRYIEPVDRDVYFEDVRLQMEAKLWGEEYNRHKPPKQVDIMQMCIIELKDRPGKPLFHLEHYIEGKYIKYNSNSGFVRDDNIRLTPQAFSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTETGTDFGDGNLGVRGMALFFYSHACNRICESMGLAPFDLSPRERDAVNQNTKLLQSAKTILRGTEEKCGSPQVRTLSGSRPPLLRPLSENSGDENMSDVTFDSLPSSPSSATPHSQKLDHLHWPVFSDLDNMASRDHDHLDNHRESENSGDSGYPSEKRGELDDPEPREHGHSYSNRKYESDEDSLGSSGRVCVEKWNLLNSSRLHLPRASAVALEVQRLNALDLEKKIGKSILGKVHLAMVRYHEGGRFCEKGEEWDQESAVFHLEHAANLGELEAIVGLGLMYSQLPHHILADVSLKETEENKTKGFDYLLKAAEAGDRQSMILVARAFDSGQNLSPDRCQDWLEALHWYNTALEMTDCDEGGEYDGMQDEPRYMMLAREAEMLFTGGYGLEKDPQRSGDLYTQAAEAAMEAMKGRLANQYYQKAEEAWAQMEE

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_8(4ZS4)
?
[Raw transfer]




ATP_C_17(3LMI)
MHCKA_DICDI
[Raw transfer]




ATP_B_13(3LMI)
MHCKA_DICDI
[Raw transfer]




ATP_D_22(3LMI)

[Raw transfer]




ATP_A_8(3LMI)
MHCKA_DICDI
[Raw transfer]




ACP_A_4(3LLA)
MHCKA_DICDI
[Raw transfer]




ATP_A_5(4ZS4)
?
[Raw transfer]




ADP_A_6(3PDT)

[Raw transfer]




ACP_B_7(3LLA)

[Raw transfer]




AMP_A_8(3LKM)

[Raw transfer]




AMP_A_8(3LKM)

[Raw transfer]




ANP_A_5(1IA9)
TRPM7_MOUSE
[Raw transfer]




AMP_A_8(3LKM)

[Raw transfer]




AMP_A_3(4ZMF)
?
[Raw transfer]




AMP_B_6(4ZMF)
?
[Raw transfer]




ADN_A_4(4ZME)
?
[Raw transfer]




ADN_B_8(4ZME)
?
[Raw transfer]




PEG_A_4(4KUJ)
?
[Raw transfer]




41 HHSearch 86.5741% -55 - C3 -3LKM 6.1
31 Fugue 86.5141% -57 - C3 -3LKM 6.1
26 PsiBlast_CBE 84.6936% -59 - C3 -4ZMF 5.8 ?
5 PsiBlast_PDB 84.4136% -60 - C3 -4ZMF 5.8 ?
21 PsiBlast_CBE 84.3836% -58 - C3 -3LLA 7.9
3 PsiBlast_PDB 84.2336% -55 - C3 -3PDT 5.4
22 PsiBlast_CBE 84.1636% -56 - C3 -4ZS4 8.3 ?
7 PsiBlast_PDB 83.9136% -55 - C3 -4ZS4 7.4 ?
27 PsiBlast_CBE 83.6236% -59 - C3 -4ZME 4.8 ?
23 PsiBlast_CBE 83.4736% -57 - C3 -3LMI 6.1
4 PsiBlast_PDB 83.4336% -59 - C3 -4ZME 4.4 ?
2 PsiBlast_PDB 83.4336% -59 - C3 -3LLA 7.9 MHCKA_DICDI
24 PsiBlast_CBE 83.2536% -57 - C3 -3LMI 5.3 MHCKA_DICDI
25 PsiBlast_CBE 83.1436% -52 - C3 -3LMI 6.4 MHCKA_DICDI
6 PsiBlast_PDB 83.1336% -56 - C3 -3LMI 7.0 MHCKA_DICDI