@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : EPHA4_HUMAN: (2015-10-07 )
MAGIFYFALFSCLFGICDAVTGSRVYPANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGYYKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVSKYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGDGANSTVLLVSVSGSVVLVVILIAAFVISRRRSKYSKAKQEADEEKHLNQGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGTESSRPNTALLDPSSPEFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHVNQEDLARIGITAITHQNKILSSVQAMRTQMQQMHGRMVPV

Atome Classification :

(77 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

7X4_A_2(2VWX)

[Raw transfer]




7X6_A_2(2VWZ)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




C07_A_2(4G2F)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




ANP_D_4(1MQB)

[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




IFC_A_2(3DZQ)

[Raw transfer]




STI_A_2(4CSV)
?
[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




L1G_A_3(2C0I)
HCK_HUMAN
[Raw transfer]




ANP_A_4(2QO7)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




B96_A_2(4TWN)

[Raw transfer]




L1G_B_5(2C0I)
HCK_HUMAN
[Raw transfer]




L2G_A_3(2C0O)
HCK_HUMAN
[Raw transfer]




25Q_A_2(4P4C)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




VSA_B_8(3VS1)
HCK_HUMAN
[Raw transfer]




VSF_B_8(3VS4)
HCK_HUMAN
[Raw transfer]




ANP_A_3(2QOQ)

[Raw transfer]




37W_A_2(4TWO)

[Raw transfer]




S03_C_3(1YOL)
SRC_HUMAN
[Raw transfer]




1BM_A_2(2HK5)
HCK_HUMAN
[Raw transfer]




L2G_B_5(2C0O)
HCK_HUMAN
[Raw transfer]




ANP_A_4(3FXX)

[Raw transfer]




I76_B_4(4DGG)
SRC_CHICK
[Raw transfer]




ANP_A_3(2OZO)
ZAP70_HUMAN
[Raw transfer]




B43_B_7(3VRY)
HCK_HUMAN
[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




VSE_A_3(3VS3)
HCK_HUMAN
[Raw transfer]




S03_D_4(1YOL)
SRC_HUMAN
[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




VSH_B_10(3VS6)
HCK_HUMAN
[Raw transfer]




VSH_A_6(3VS6)
HCK_HUMAN
[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




STU_A_2(1U59)

[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




VS0_B_8(3VS0)
HCK_HUMAN
[Raw transfer]




11V_B_4(4O2P)
SRC_CHICK
[Raw transfer]




11V_A_3(4O2P)
SRC_CHICK
[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




VSB_B_7(3VS2)
HCK_HUMAN
[Raw transfer]




RXT_A_3(4U5J)
SRC_CHICK
[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




PP1_B_2(1QCF)
HCK_HUMAN
[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




MPZ_G_7(1Y57)
SRC_HUMAN
[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




DB8_B_4(4MXX)
SRC_HUMAN
[Raw transfer]




PP2_B_4(3GEQ)
SRC_CHICK
[Raw transfer]




DB8_A_2(4OTW)

[Raw transfer]




RXT_B_4(4U5J)
SRC_CHICK
[Raw transfer]




DB8_A_3(4MXX)
SRC_HUMAN
[Raw transfer]




P01_B_4(1YOM)
SRC_HUMAN
[Raw transfer]




DB8_A_3(4MXO)
SRC_HUMAN
[Raw transfer]




DB8_B_4(4MXO)
SRC_HUMAN
[Raw transfer]




P01_A_3(1YOM)
SRC_HUMAN
[Raw transfer]




0UL_B_4(4FIC)
SRC_CHICK
[Raw transfer]




ACP_A_2(4UEU)
?
[Raw transfer]




24A_D_4(2BDF)
SRC_HUMAN
[Raw transfer]




0UL_A_3(4FIC)
SRC_CHICK
[Raw transfer]




24A_C_3(2BDF)
SRC_HUMAN
[Raw transfer]




HET_B_2(2BDJ)
SRC_HUMAN
[Raw transfer]




13 PsiBlast_PDB 72.7375%-107 - C2 -3FXX 4.5
8 PsiBlast_PDB 72.5699%-115 - C2 -2Y6M 2.6
9 PsiBlast_PDB 72.2199%-117 - C2 -2Y6O 7.4
10 PsiBlast_PDB 72.1399%-119 - C2 -2XYU 7.1
50 PsiBlast_CBE 71.9676%-106 - C2 -2VX1 7.3
19 PsiBlast_PDB 71.9575%-106 - C2 -2QOQ 4.5
12 PsiBlast_PDB 71.9275%-108 - C2 -2QO9 4.1
54 PsiBlast_CBE 71.5776%-105 - C2 -2VWX 6.4
24 PsiBlast_CBE 71.2875%-105 - C2 -2QOC 5.2
52 PsiBlast_CBE 71.1876%-102 - C2 -2VWZ 7.4
32 PsiBlast_CBE 71.0275%-112 - C2 -3DZQ 10.8
18 PsiBlast_PDB 70.9575%-105 - C2 -2QO7 4.7
51 PsiBlast_CBE 70.8476%-104 - C2 -2VX0 7.4
53 PsiBlast_CBE 70.7676%-103 - C2 -2VWY 6.7
49 PsiBlast_CBE 70.0076%-106 - C2 -2X9F 6.3
31 PsiBlast_CBE 69.9175%-108 - C2 -4G2F 5.7
55 PsiBlast_CBE 69.7177%-108 - C2 -4AW5 7.4
47 PsiBlast_CBE 69.7176%-110 - C2 -4BB4 6.7
35 PsiBlast_CBE 69.6781%-110 - C2 -1JPA 4.2
27 PsiBlast_CBE 69.5175%-108 - C2 -4P4C 6.1
40 PsiBlast_CBE 69.4983%-107 - C2 -2HEN 5.6
36 PsiBlast_CBE 69.3181%-108 - C2 -1JPA 4.1 EPHB2_MOUSE
25 PsiBlast_CBE 69.2275%-107 - C2 -4TWO 5.9
42 PsiBlast_CBE 68.9083%-107 - C2 -2HEN 5.5 EPHB2_MOUSE
33 PsiBlast_CBE 68.7581%-104 - C2 -3DKO 8.4
43 PsiBlast_CBE 68.5183%-107 - C2 -2HEN 4.7 EPHB2_MOUSE
41 PsiBlast_CBE 68.1883%-104 - C2 -2HEN 5.1 EPHB2_MOUSE
26 PsiBlast_CBE 68.1575%-111 - C2 -4TWN 11.9
56 PsiBlast_CBE 67.9474%-110 - C2 -1MQB 4.5
44 PsiBlast_CBE 67.8278%-113 - C2 -2YN8 8.9
48 PsiBlast_CBE 67.6876%-103 - C2 -2XVD 7.0
45 PsiBlast_CBE 67.1578%-113 - C2 -2YN8 8.5 EPHB4_HUMAN
46 PsiBlast_CBE 65.8873%-106 - C2 -3KUL 2.9 EPHA8_HUMAN
135 HHSearch 65.7772%-106 - C2 -3KUL 2.9 EPHA8_HUMAN
57 PsiBlast_CBE 65.5074%-108 - C2 -1MQB 4.0 EPHA2_HUMAN
136 HHSearch 64.7871%-106 * C2 *1MQB 4.0 EPHA2_HUMAN
146 HHSearch 58.4139%-103 - C2 -2OZO 5.8 ZAP70_HUMAN
137 HHSearch 57.1442% -95 - C2 -3CBL 8.6
143 HHSearch 55.7444%-100 - C2 -1QCF 6.6 HCK_HUMAN
147 HHSearch 55.2740% -96 - C2 -1U59 5.8
79 PsiBlast_CBE 54.6445% -98 - C2 -4CSV 10.1 ?
141 HHSearch 54.6032% -89 - C2 -4OTW 6.6
95 PsiBlast_CBE 53.3243% -96 - C2 -2HK5 8.4 HCK_HUMAN
78 PsiBlast_CBE 52.2945% -91 - C2 -4UEU 3.7 ?
87 PsiBlast_CBE 52.2840% -88 - C2 -3VRY 8.2 HCK_HUMAN
91 PsiBlast_CBE 52.1540% -88 - C2 -2C0I 10.7 HCK_HUMAN
138 HHSearch 52.0537% -97 - C2 -3POZ 10.7
81 PsiBlast_CBE 52.0340% -91 - C2 -3VS6 8.4 HCK_HUMAN
83 PsiBlast_CBE 51.8740% -88 - C2 -3VS3 8.6 HCK_HUMAN
89 PsiBlast_CBE 51.8540% -91 - C2 -2C0O 10.5 HCK_HUMAN
82 PsiBlast_CBE 51.6140% -87 - C2 -3VS4 8.3 HCK_HUMAN
80 PsiBlast_CBE 51.5540% -88 - C2 -3VS6 8.2 HCK_HUMAN
86 PsiBlast_CBE 51.4840% -88 - C2 -3VS0 7.9 HCK_HUMAN
88 PsiBlast_CBE 51.3340% -88 - C2 -2C0O 10.6 HCK_HUMAN
90 PsiBlast_CBE 51.3240% -87 - C2 -2C0I 10.7 HCK_HUMAN
115 PsiBlast_CBE 50.7944% -93 - C2 -4DGG 9.7 SRC_CHICK
110 PsiBlast_CBE 50.6544% -90 - C2 -4U5J 5.4 SRC_CHICK
112 PsiBlast_CBE 50.5044% -88 - C2 -4O2P 6.6 SRC_CHICK
102 PsiBlast_CBE 50.1344% -86 - C2 -1YOL 6.6 SRC_HUMAN
85 PsiBlast_CBE 50.1340% -90 - C2 -3VS1 8.7 HCK_HUMAN
101 PsiBlast_CBE 49.9144% -91 - C2 -4MXO 6.1 SRC_HUMAN
109 PsiBlast_CBE 49.6144% -89 - C2 -4U5J 5.3 SRC_CHICK
100 PsiBlast_CBE 49.6044% -90 - C2 -4MXO 6.1 SRC_HUMAN
96 PsiBlast_CBE 49.5644% -82 - C2 -1Y57 5.3 SRC_HUMAN
107 PsiBlast_CBE 49.2844% -92 - C2 -1YOM 6.4 SRC_HUMAN
104 PsiBlast_CBE 49.1345% -86 - C2 -2BDJ 8.4 SRC_HUMAN
97 PsiBlast_CBE 48.9844% -91 - C2 -4MXX 6.0 SRC_HUMAN
84 PsiBlast_CBE 48.9840% -88 - C2 -3VS2 7.1 HCK_HUMAN
111 PsiBlast_CBE 48.8844% -90 - C2 -4O2P 6.9 SRC_CHICK
103 PsiBlast_CBE 48.7044% -85 - C2 -1YOL 4.3 SRC_HUMAN
113 PsiBlast_CBE 48.6544% -92 - C2 -4FIC 4.8 SRC_CHICK
114 PsiBlast_CBE 48.4944% -95 - C2 -4FIC 4.5 SRC_CHICK
106 PsiBlast_CBE 47.8345% -87 - C2 -2BDF 6.7 SRC_HUMAN
105 PsiBlast_CBE 47.8245% -87 - C2 -2BDF 6.3 SRC_HUMAN
99 PsiBlast_CBE 47.7344% -86 - C2 -3GEQ 6.1 SRC_CHICK
108 PsiBlast_CBE 46.7844% -81 - C2 -1YOM 6.1 SRC_HUMAN
98 PsiBlast_CBE 46.3344% -91 - C2 -4MXX 5.8 SRC_HUMAN