@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : EPHB4_HUMAN: (2015-10-07 )
MELRVLLCWASLAAALEETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCAQLTVNLTRFPETVPRELVVPVAGSCVVDAVPAPGPSPSLYCREDGQWAEQPVTGCSCAPGFEAAEGNTKCRACAQGTFKPLSGEGSCQPCPANSHSNTIGSAVCQCRVGYFRARTDPRGAPCTTPPSAPRSVVSRLNGSSLHLEWSAPLESGGREDLTYALRCRECRPGGSCAPCGGDLTFDPGPRDLVEPWVVVRGLRPDFTYTFEVTALNGVSSLATGPVPFEPVNVTTDREVPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDESEGWREQLALIAGTAVVGVVLVLVVIVVAVLCLRKQSNGREAEYSDKHGQYLIGHGTKVYIDPFTYEDPNEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAKPGTPGGTGGPAPQY

Atome Classification :

(79 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AS6_A_2(2XVD)

[Raw transfer]




7X6_A_2(2VWZ)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




C07_A_2(4G2F)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




ANP_D_4(1MQB)

[Raw transfer]




STI_A_2(4CSV)
?
[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




ATP_A_4(2IJM)
FAK1_HUMAN
[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




IFC_A_2(3DZQ)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




ANP_A_4(2QO7)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




B96_A_2(4TWN)

[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




VSE_B_10(4LUE)
HCK_HUMAN
[Raw transfer]




VSE_A_4(4LUE)
HCK_HUMAN
[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




25Q_A_2(4P4C)

[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




KAO_B_5(4KAO)

[Raw transfer]




K9Y_A_2(4K9Y)

[Raw transfer]




ADP_B_2(1MP8)

[Raw transfer]




10N_A_3(4GU6)
FAK1_HUMAN
[Raw transfer]




ANP_A_4(3FXX)

[Raw transfer]




ANP_A_3(2QOQ)

[Raw transfer]




GOL_B_12(4LUD)
HCK_HUMAN
[Raw transfer]




GOL_A_6(4LUE)
HCK_HUMAN
[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




4ST_B_4(2J0K)
FAK1_CHICK
[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




ADP_B_3(2IJM)

[Raw transfer]




37W_A_2(4TWO)

[Raw transfer]




4ST_A_3(2J0K)
FAK1_CHICK
[Raw transfer]




4ST_A_2(2J0J)
FAK1_CHICK
[Raw transfer]




10N_B_4(4GU6)

[Raw transfer]




KAO_A_3(4KAO)
FAK1_HUMAN
[Raw transfer]




PXK_A_3(3PXK)
FAK1_HUMAN
[Raw transfer]




4GU_B_4(4GU9)

[Raw transfer]




5RI_A_2(4C7T)

[Raw transfer]




4ST_B_3(2J0M)
?
[Raw transfer]




4GU_A_3(4GU9)
FAK1_HUMAN
[Raw transfer]




SK8_A_5(4LUD)
HCK_HUMAN
[Raw transfer]




SK8_B_8(4LUD)
HCK_HUMAN
[Raw transfer]




YAM_A_2(3BZ3)

[Raw transfer]




BI9_B_9(4D4S)

[Raw transfer]




4KA_A_3(4KAB)
FAK1_HUMAN
[Raw transfer]




7PY_C_3(2ETM)
FAK1_HUMAN
[Raw transfer]




1BQ_A_2(4I4E)

[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




PP2_B_4(3GEQ)
SRC_CHICK
[Raw transfer]




BI9_B_6(4D58)
?
[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




BII_A_2(2JKM)

[Raw transfer]




30G_A_2(4Q9S)

[Raw transfer]




7PY_D_4(2ETM)

[Raw transfer]




PXK_B_5(3PXK)

[Raw transfer]




BIJ_A_2(2JKO)

[Raw transfer]




ACP_A_2(4UEU)
?
[Raw transfer]




K8A_A_3(4K8A)
FAK1_HUMAN
[Raw transfer]




9RM_A_3(4D5H)
FAK1_CHICK
[Raw transfer]




4KA_B_4(4KAB)

[Raw transfer]




BI9_A_3(2JKK)
?
[Raw transfer]




1BR_A_3(4I4F)

[Raw transfer]




K8A_B_4(4K8A)

[Raw transfer]




VG8_A_2(2JKQ)

[Raw transfer]




KB8_B_10(4D4V)

[Raw transfer]




0PF_A_2(4EBW)

[Raw transfer]




0O7_A_2(4EBV)

[Raw transfer]




IPA_A_3(4EBV)

[Raw transfer]




DMS_B_6(4D4V)

[Raw transfer]




5 PsiBlast_PDB 84.7799%-110 - C1 -2VX1 7.3
1 PsiBlast_PDB 83.9599%-109 - C1 -2VWX 6.4
8 PsiBlast_PDB 83.7499%-115 - C1 -4BB4 6.8
2 PsiBlast_PDB 83.3399%-106 - C1 -2VWY 6.9
21 PsiBlast_CBE 83.0798%-117 - C1 -2YN8 8.4
3 PsiBlast_PDB 82.6199%-105 - C1 -2VWZ 7.6
4 PsiBlast_PDB 82.4699%-108 - C1 -2VX0 7.3
10 PsiBlast_PDB 82.44100%-112 - C1 -4AW5 7.4
6 PsiBlast_PDB 82.3199%-111 - C1 -2X9F 6.7
9 PsiBlast_PDB 81.3798%-118 - C1 -2YN8 8.4 EPHB4_HUMAN
22 PsiBlast_CBE 81.2983%-108 - C1 -1JPA 4.2
7 PsiBlast_PDB 81.0399%-109 - C1 -2XVD 6.9
40 PsiBlast_CBE 78.9477%-105 - C1 -3DKO 8.4
11 PsiBlast_PDB 78.0883%-107 - C1 -1JPA 4.1 EPHB2_MOUSE
45 PsiBlast_CBE 78.0677%-115 - C1 -2XYU 7.0
43 PsiBlast_CBE 77.3077%-110 - C1 -2Y6M 2.6
29 PsiBlast_CBE 77.2783%-107 - C1 -2HEN 4.8 EPHB2_MOUSE
28 PsiBlast_CBE 77.1683%-107 - C1 -2HEN 5.3 EPHB2_MOUSE
42 PsiBlast_CBE 76.9877%-113 - C1 -2Y6O 7.4
26 PsiBlast_CBE 76.5383%-107 - C1 -2HEN 5.6
27 PsiBlast_CBE 76.4883%-105 - C1 -2HEN 5.0 EPHB2_MOUSE
15 PsiBlast_PDB 76.0267%-105 - C1 -3FXX 4.0
30 PsiBlast_CBE 75.8667%-105 - C1 -2QOC 4.5
24 PsiBlast_CBE 75.3867%-105 - C1 -2QOQ 4.3
25 PsiBlast_CBE 74.6767%-104 - C1 -2QO7 4.7
38 PsiBlast_CBE 73.6267%-111 - C1 -3DZQ 10.7
18 PsiBlast_PDB 73.5667%-106 - C1 -2QO9 3.9
32 PsiBlast_CBE 73.4367%-111 - C1 -4TWN 12.0
31 PsiBlast_CBE 72.9167%-105 - C1 -4TWO 6.1
47 PsiBlast_CBE 72.5868%-107 - C1 -1MQB 4.2
37 PsiBlast_CBE 72.5367%-108 - C1 -4G2F 5.7
33 PsiBlast_CBE 72.2867%-108 - C1 -4P4C 6.1
46 PsiBlast_CBE 72.2366%-106 - C1 -3KUL 2.9 EPHA8_HUMAN
48 PsiBlast_CBE 71.0068%-106 - C1 -1MQB 4.3 EPHA2_HUMAN
106 PsiBlast_CBE 63.0941% -98 - C1 -2J0K 9.0 FAK1_CHICK
80 PsiBlast_CBE 61.8542%-100 - C1 -3PXK 4.8 FAK1_HUMAN
70 PsiBlast_CBE 61.6342% -98 - C1 -4EBV 5.5
72 PsiBlast_CBE 61.4842%-102 - C1 -4I4F 7.3
73 PsiBlast_CBE 61.3842% -98 - C1 -4I4E 6.2
71 PsiBlast_CBE 61.3642% -99 - C1 -4Q9S 5.2
99 PsiBlast_CBE 61.3541%-100 - C1 -4D4S 5.7
107 PsiBlast_CBE 61.3441%-104 - C1 -2J0K 7.8 FAK1_CHICK
79 PsiBlast_CBE 61.3442% -99 - C1 -3PXK 5.3
74 PsiBlast_CBE 61.3442% -95 - C1 -1MP8 6.3
68 PsiBlast_CBE 61.3242%-101 - C1 -4GU9 5.6 FAK1_HUMAN
92 PsiBlast_CBE 61.2641%-100 - C1 -4D58 5.3 ?
98 PsiBlast_CBE 61.2141% -99 - C1 -4D4V - FAK1_CHICK
102 PsiBlast_CBE 61.1741% -94 - C1 -4C7T 5.7
69 PsiBlast_CBE 61.0942%-100 - C1 -4EBW 6.1
104 PsiBlast_CBE 60.9841% -95 - C1 -2JKO 5.4
91 PsiBlast_CBE 60.8941%-102 - C1 -4D5H 5.3 FAK1_CHICK
82 PsiBlast_CBE 60.6742% -98 - C1 -2IJM 5.2 FAK1_HUMAN
67 PsiBlast_CBE 60.4442% -96 - C1 -4GU9 5.5
65 PsiBlast_CBE 60.4042% -94 - C1 -4K8A 4.3
87 PsiBlast_CBE 60.3642%-101 - C1 -3BZ3 6.5
105 PsiBlast_CBE 60.3241% -95 - C1 -2JKK 6.2 ?
84 PsiBlast_CBE 60.2542% -95 - C1 -2ETM 5.6 FAK1_HUMAN
61 PsiBlast_CBE 60.2542% -99 - C1 -2JKM 5.5
60 PsiBlast_CBE 60.1942% -98 - C1 -2J0J 8.2 FAK1_CHICK
63 PsiBlast_CBE 59.8742%-103 - C1 -4KAB 3.0 FAK1_HUMAN
76 PsiBlast_CBE 59.3342% -99 - C1 -4KAO 8.4 FAK1_HUMAN
86 PsiBlast_CBE 59.2142%-108 - C1 -2J0M 8.1 ?
85 PsiBlast_CBE 59.1342% -96 - C1 -2JKQ 5.7
62 PsiBlast_CBE 59.1242% -99 - C1 -4KAB 2.8
66 PsiBlast_CBE 59.0242% -99 - C1 -4K8A 4.2 FAK1_HUMAN
81 PsiBlast_CBE 58.9442% -98 - C1 -2IJM 4.8
97 PsiBlast_CBE 58.9141%-100 - C1 -4D4V 4.1
59 PsiBlast_CBE 58.6743%-101 - C1 -4CSV 10.3 ?
77 PsiBlast_CBE 58.6342% -96 - C1 -4GU6 5.7
75 PsiBlast_CBE 58.5842%-100 - C1 -4KAO 8.4
83 PsiBlast_CBE 58.1742% -94 * C1 *2ETM 6.2
78 PsiBlast_CBE 57.9842% -90 - C1 -4GU6 6.4 FAK1_HUMAN
64 PsiBlast_CBE 57.2842% -91 - C1 -4K9Y 10.7
111 PsiBlast_CBE 56.5142%-104 - C1 -4LUD 6.2 HCK_HUMAN
110 PsiBlast_CBE 56.1442%-104 - C1 -4LUE 9.4 HCK_HUMAN
58 PsiBlast_CBE 54.8343% -93 - C1 -4UEU 3.6 ?
108 PsiBlast_CBE 54.3145% -89 - C1 -3GEQ 6.1 SRC_CHICK
109 PsiBlast_CBE 53.8542%-105 - C1 -4LUE 8.9 HCK_HUMAN
112 PsiBlast_CBE 53.2542%-103 - C1 -4LUD 4.8 HCK_HUMAN