@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : MARK3_HUMAN: (2015-10-13 )
MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTSRSGARCRNSIASCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSDLNNSTGQSPHHKVQRSVFSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADSDLKEDGISSRKSSGSAVGGKGIAPASPMLGNASNPNKADIPERKKSSTVPSSNTASGGMTRRNTYVCSERTTADRHSVIQNGKENSTIPDQRTPVASTHSISSAATPDRIRFPRGTASRSTFHGQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRNMSFRFIKRLPTEYERNGRYEGSSRNVSAEQKDENKEAKPRSLRFTWSMKTTSSMDPGDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(2YEX)
CHK1_HUMAN
[Raw transfer]




2PY_C_3(2OH0)
KAPCA_BOVIN
[Raw transfer]




2EA_C_3(2F7E)
KAPCA_BOVIN
[Raw transfer]




ANP_A_2(4BL1)
MELK_HUMAN
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




4PY_C_3(2OJF)
KAPCA_BOVIN
[Raw transfer]




AK8_A_3(3EFW)
AURKA_HUMAN
[Raw transfer]




4EA_C_3(2F7X)
KAPCA_BOVIN
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




6EA_C_3(2F7Z)
KAPCA_BOVIN
[Raw transfer]




AK8_B_5(3EFW)
AURKA_HUMAN
[Raw transfer]




5CP_B_6(3BHH)
KCC2B_HUMAN
[Raw transfer]




VGG_A_2(2WEI)
?
[Raw transfer]




ANP_A_4(3HKO)
?
[Raw transfer]




5CP_A_5(3BHH)
KCC2B_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




DXR_B_4(3MA6)
?
[Raw transfer]




FS9_A_3(3WF7)
KS6B1_HUMAN
[Raw transfer]




1WS_A_2(4BKZ)
MELK_HUMAN
[Raw transfer]




DXR_A_3(3MA6)
?
[Raw transfer]




S25_A_3(3TKI)
CHK1_HUMAN
[Raw transfer]




YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]




MES_A_2(2Y0A)
DAPK1_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




CPS_B_12(4CZT)
CIPKN_ARATH
[Raw transfer]




CPS_A_5(4CZU)
CIPKN_ARATH
[Raw transfer]




CPS_B_10(4CZU)
CIPKN_ARATH
[Raw transfer]




CPS_A_5(4CZT)
CIPKN_ARATH
[Raw transfer]




EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]




126 HHSearch 71.0642% -87 - C2 -4BKY 7.9 MELK_HUMAN
106 PsiBlast_CBE 68.3538%-108 - C2 -3BHH 6.0 KCC2B_HUMAN
105 PsiBlast_CBE 67.4338%-107 - C2 -3BHH 5.7 KCC2B_HUMAN
32 PsiBlast_CBE 66.4741% -95 - C2 -4BKZ 5.7 MELK_HUMAN
18 PsiBlast_PDB 65.9846% -95 - C2 -3AQV 7.4 AAPK2_HUMAN
146 HHSearch 65.4637% -94 - C2 -3HKO 5.2 ?
29 PsiBlast_CBE 64.3741% -93 - C2 -4CZU 4.4 CIPKN_ARATH
26 PsiBlast_CBE 64.3442% -93 - C2 -4CZT 4.8 CIPKN_ARATH
24 PsiBlast_CBE 64.0642% -94 - C2 -4CZT - CIPKN_ARATH
27 PsiBlast_CBE 63.3241% -93 - C2 -4CZU - CIPKN_ARATH
28 PsiBlast_CBE 62.9941% -99 - C2 -4CZU - CIPKN_ARATH
25 PsiBlast_CBE 62.6042% -99 - C2 -4CZT - CIPKN_ARATH
31 PsiBlast_CBE 62.3941% -93 - C2 -4BL1 6.4 MELK_HUMAN
139 HHSearch 62.2736% -95 - C2 -2Y0A 2.8 DAPK1_HUMAN
20 PsiBlast_PDB 62.2542% -87 - C2 -4CZT 3.9 CIPKN_ARATH
82 PsiBlast_CBE 62.2339% -96 - C2 -3MA6 5.2 ?
107 PsiBlast_CBE 61.9131%-109 - C2 -3EFW 8.3 AURKA_HUMAN
30 PsiBlast_CBE 61.9141% -93 - C2 -4CZU 4.8 CIPKN_ARATH
83 PsiBlast_CBE 61.8739% -93 - C2 -3MA6 4.5 ?
108 PsiBlast_CBE 61.2131%-112 - C2 -3EFW 7.7 AURKA_HUMAN
140 HHSearch 60.2934% -92 - C2 -3WF7 7.3 KS6B1_HUMAN
94 PsiBlast_CBE 60.2738% -91 - C2 -2WEI 6.0 ?
143 HHSearch 59.5736% -97 - C2 -3TKI 6.0 CHK1_HUMAN
130 HHSearch 59.4332% -90 - C2 -2W5A 4.4 NEK2_HUMAN
131 HHSearch 59.1336% -89 - C2 -2YEX 4.3 CHK1_HUMAN
100 PsiBlast_CBE 56.9133% -74 - C2 -2F7Z 6.9 KAPCA_BOVIN
99 PsiBlast_CBE 56.8933% -67 - C2 -2OH0 7.2 KAPCA_BOVIN
101 PsiBlast_CBE 56.7333% -64 - C2 -2F7X 7.1 KAPCA_BOVIN
98 PsiBlast_CBE 56.4233% -66 - C2 -2OJF 6.5 KAPCA_BOVIN
102 PsiBlast_CBE 55.7133% -65 - C2 -2F7E 7.0 KAPCA_BOVIN