@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : MARK4_HUMAN: (2015-10-13 )
MSSRTVLAPGNDRNSDTHGTLGSGRSSDKGPSWSSRSLGARCRNSIASCPEEQPHVGNYRLLRTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPSSLQKLFREVRIMKGLNHPNIVKLFEVIETEKTLYLVMEYASAGEVFDYLVSHGRMKEKEARAKFRQIVSAVHYCHQKNIVHRDLKAENLLLDAEANIKIADFGFSNEFTLGSKLDTFCGSPPYAAPELFQGKKYDGPEVDIWSLGVILYTLVSGSLPFDGHNLKELRERVLRGKYRVPFYMSTDCESILRRFLVLNPAKRCTLEQIMKDKWINIGYEGEELKPYTEPEEDFGDTKRIEVMVGMGYTREEIKESLTSQKYNEVTATYLLLGRKTEEGGDRGAPGLALARVRAPSDTTNGTSSSKGTSHSKGQRSSSSTYHRQRRHSDFCGPSPAPLHPKRSPTSTGEAELKEERLPGRKASCSTAGSGSRGLPPSSPMVSSAHNPNKAEIPERRKDSTSTPNNLPPSMMTRRNTYVCTERPGAERPSLLPNGKENSSGTPRVPPASPSSHSLAPPSGERSRLARGSTIRSTFHGGQVRDRRAGGGGGGGVQNGPPASPTLAHEAAPLPAGRPRPTTNLFTKLTSKLTRRVADEPERIGGPEVTSCHLPWDQTETAPRLLRFPWSVKLTSSRPPEALMAALRQATAAARCRCRQPQPFLLACLHGGAGGPEPLSHFEVEVCQLPRPGLRGVLFRRVAGTALAFRTLVTRISNDLEL

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AK3_A_2(3D2I)
AURKA_MOUSE
[Raw transfer]




AK8_A_3(3EFW)
AURKA_HUMAN
[Raw transfer]




AK8_B_5(3EFW)
AURKA_HUMAN
[Raw transfer]




AK6_A_2(3DJ6)
AURKA_MOUSE
[Raw transfer]




2PY_C_3(2OH0)
KAPCA_BOVIN
[Raw transfer]




ANP_A_2(4BL1)
MELK_HUMAN
[Raw transfer]




AK1_A_2(3D14)
AURKA_MOUSE
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




AK2_A_2(3D15)
AURKA_MOUSE
[Raw transfer]




4EA_C_3(2F7X)
KAPCA_BOVIN
[Raw transfer]




AK5_A_2(3DJ5)
AURKA_MOUSE
[Raw transfer]




OT5_A_2(4CQG)
MELK_MOUSE
[Raw transfer]




6EA_C_3(2F7Z)
KAPCA_BOVIN
[Raw transfer]




4PY_C_3(2OJF)
KAPCA_BOVIN
[Raw transfer]




AK7_A_2(3DJ7)
AURKA_MOUSE
[Raw transfer]




VGG_A_2(2WEI)
?
[Raw transfer]




DXR_B_4(3MA6)
?
[Raw transfer]




1WS_A_2(4BKZ)
MELK_HUMAN
[Raw transfer]




DXR_A_3(3MA6)
?
[Raw transfer]




ANP_A_7(3COK)
PLK4_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




CPS_C_16(4CZU)
CIPKN_ARATH
[Raw transfer]




CPS_B_12(4CZT)
CIPKN_ARATH
[Raw transfer]




CPS_B_10(4CZU)
CIPKN_ARATH
[Raw transfer]




CPS_A_5(4CZT)
CIPKN_ARATH
[Raw transfer]




CPS_A_5(4CZU)
CIPKN_ARATH
[Raw transfer]




34 PsiBlast_CBE 65.5741%-101 - C3 -4CQG 8.5 MELK_MOUSE
24 PsiBlast_CBE 64.8142%-104 - C3 -4CZT - CIPKN_ARATH
27 PsiBlast_CBE 64.2842%-104 - C3 -4CZU - CIPKN_ARATH
105 PsiBlast_CBE 64.2435%-117 - C3 -3DJ5 8.8 AURKA_MOUSE
25 PsiBlast_CBE 64.2142%-109 - C3 -4CZT - CIPKN_ARATH
104 PsiBlast_CBE 63.9335%-116 - C3 -3DJ6 9.3 AURKA_MOUSE
28 PsiBlast_CBE 63.6542%-109 - C3 -4CZU 4.4 CIPKN_ARATH
33 PsiBlast_CBE 63.5545%-109 - C3 -4BKY 7.9 MELK_HUMAN
99 PsiBlast_CBE 63.2634%-121 * C3 *3EFW 8.3 AURKA_HUMAN
103 PsiBlast_CBE 63.1235%-109 - C3 -3DJ7 7.9 AURKA_MOUSE
30 PsiBlast_CBE 63.1042%-103 - C3 -4CZU 4.7 CIPKN_ARATH
17 PsiBlast_PDB 63.0745%-104 - C3 -3AQV 7.3 AAPK2_HUMAN
32 PsiBlast_CBE 62.8845%-109 - C3 -4BKZ 5.7 MELK_HUMAN
106 PsiBlast_CBE 62.7635%-113 - C3 -3D2I 8.1 AURKA_MOUSE
26 PsiBlast_CBE 62.7342%-103 - C3 -4CZT 5.0 CIPKN_ARATH
108 PsiBlast_CBE 62.6635%-107 - C3 -3D14 7.2 AURKA_MOUSE
29 PsiBlast_CBE 62.6342%-103 - C3 -4CZU 4.5 CIPKN_ARATH
100 PsiBlast_CBE 62.5334%-127 - C3 -3EFW 7.7 AURKA_HUMAN
20 PsiBlast_PDB 62.0542% -98 - C3 -4CZT 4.2 CIPKN_ARATH
31 PsiBlast_CBE 61.9345%-107 - C3 -4BL1 6.4 MELK_HUMAN
80 PsiBlast_CBE 61.7839%-105 - C3 -3MA6 4.5 ?
88 PsiBlast_CBE 61.2538%-102 - C3 -2WEI 6.0 ?
107 PsiBlast_CBE 60.9535%-108 - C3 -3D15 7.1 AURKA_MOUSE
79 PsiBlast_CBE 58.8139%-108 - C3 -3MA6 5.2 ?
114 PsiBlast_CBE 58.8033% -73 - C3 -2F7X 7.1 KAPCA_BOVIN
111 PsiBlast_CBE 58.3333% -77 - C3 -2OJF 6.5 KAPCA_BOVIN
112 PsiBlast_CBE 58.1033% -78 - C3 -2OH0 7.2 KAPCA_BOVIN
109 PsiBlast_CBE 57.9837%-112 - C3 -3COK 5.9 PLK4_HUMAN
113 PsiBlast_CBE 57.4633% -80 - C3 -2F7Z 6.9 KAPCA_BOVIN