@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NEK10_HUMAN: (2015-10-15 )
MPDQDKKVKTTEKSTDKQQEITIRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNSMTKSEPAIRAGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQRKLFQEIFTALVKNRLISREWVNRAPSIHFLRVLICLRLLMRDPCYQEILHSLGGIENLAQYMEIVANEYLGYGEEQHTVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLGARDTNVLLGSLLALASLAESQECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAEPQVKEQVKLYEGIPVLLSLLHSDHLKLLWSIVWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSDHSSIGSLSSANAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAHQVVQENGVYTIAKLILPNKQKNAAKSNLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISAYEELVSKLNLLVEDELKQIAENIESINQNKAPLKYIGNYAILDHLGSGAFGCVYKVRKHSGQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKHHHFTEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQKQENSKLTSVVGTILYSCPEVLKSEPYGEKADVWAVGCILYQMATLSPPFYSTNMLSLATKIVEAVYEPVPEGIYSEKVTDTISRCLTPDAEARPDIVEVSSMISDVMMKYLDNLSTSQLSLEKKLERERRRTQRYFMEANRNTVTCHHELAVLSHETFEKASLSSSSSGAASLKSELSESADLPPEGFQASYGKDEDRACDEILSDDNFNLENAEKDTYSEVDDELDISDNSSSSSSSPLKESTFNILKRSFSASGGERQSQTRDFTGGTGSRPRPALLPLDLLLKVPPHMLRAHIKEIEAELVTGWQSHSLPAVILRNLKDHGPQMGTFLWQASAGIAVSQRKVRQISDPIQQILIQLHKIIYITQLPPALHHNLKRRVIERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIEPNFFTADYHLLHRSSGGNSLSPNDPTGLPTSIELEEGITYEQMQTVIEEVLEESGYYNFTSNRYHSYPWGTKNHPTKR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




ATP_A_2(4FG7)
KCC1A_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




ZZL_A_2(2X81)
AURKA_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




ZZL_A_2(2WTW)
AURKA_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




18 PsiBlast_PDB 74.4833% -95 - C2 -2JAV 5.8 NEK2_HUMAN
7 PsiBlast_PDB 73.7433% -93 - C2 -2XK6 5.2 NEK2_HUMAN
12 PsiBlast_PDB 72.3433% -97 - C2 -2XKF 4.7 NEK2_HUMAN
6 PsiBlast_PDB 72.1533% -89 - C2 -2XK4 5.6 NEK2_HUMAN
16 PsiBlast_PDB 71.8233% -91 - C2 -2XNO 5.5 NEK2_HUMAN
11 PsiBlast_PDB 71.5633% -95 - C2 -2XKD 5.3 NEK2_HUMAN
17 PsiBlast_PDB 71.4733% -90 - C2 -2XNP 7.7 NEK2_HUMAN
5 PsiBlast_PDB 71.2433% -91 - C2 -2XK3 5.7 NEK2_HUMAN
8 PsiBlast_PDB 71.0633% -96 - C2 -2XK7 5.1 NEK2_HUMAN
9 PsiBlast_PDB 70.5633% -93 - C2 -2XK8 5.5 NEK2_HUMAN
4 PsiBlast_PDB 70.3133% -91 - C2 -2WQO 6.6 NEK2_HUMAN
15 PsiBlast_PDB 70.0433% -90 - C2 -2XNN 5.6 NEK2_HUMAN
14 PsiBlast_PDB 69.9833% -91 - C2 -2XNM 5.8 NEK2_HUMAN
10 PsiBlast_PDB 69.8233% -92 - C2 -2XKC 4.5 NEK2_HUMAN
13 PsiBlast_PDB 69.8133% -95 - C2 -2XKE 5.2 NEK2_HUMAN
3 PsiBlast_PDB 69.5533% -88 - C2 -2W5A 3.9 NEK2_HUMAN
19 PsiBlast_PDB 68.2933% -86 - C2 -2W5B 3.8 NEK2_HUMAN
33 PsiBlast_CBE 63.6933% -89 - C2 -4FG7 4.4 KCC1A_HUMAN
71 PsiBlast_CBE 59.9831% -80 - C2 -2X81 5.1 AURKA_HUMAN
45 PsiBlast_CBE 57.8331% -75 - C2 -2WTW 7.4 AURKA_HUMAN