@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NEK4_HUMAN: (2015-10-15 )
MPLAAYCYLRVVGKGSYGEVTLVKHRRDGKQYVIKKLNLRNASSRERRAAEQEAQLLSQLKHPNIVTYKESWEGGDGLLYIVMGFCEGGDLYRKLKEQKGQLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPRDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKRQISFFLEATKIKTSKNNIKNGDSQSKPFATVVSGEAESNHEVIHPQPLSSEGSQTYIMGEGKCLSQEKPRASGLLKSPASLKAHTCKQDLSNTTELATISSVNIDILPAKGRDSVSDGFVQENQPRYLDASNELGGICSISQVEEEMLQDNTKSSAQPENLIPMWSSDIVTGEKNEPVKPLQPLIKEQKPKDQSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGITGVCHHAQDQVAGECIIEKQGRIHPDLQPHNSGSEPSLSRQRRQKRREQTEHRGEKRQVRRDLFAFQESPPRFLPSHPIVGKVDVTSTQKEAENQRRVVTGSVSSSRSSEMSSSKDRPLSARERRRLKQSQEEMSSSGPSVRKASLSVAGPGKPQEEDQPLPARRLSSDCSVTQERKQIHCLSEDELSSSTSSTDKSDGDYGEGKGQTNEINALVQLMTQTLKLDSKESCEDVPVANPVSEFKLHRKYRDTLILHGKVAEEAEEIHFKELPSAIMPGSEKIRRLVEVLRTDVIRGLGVQLLEQVYDLLEEEDEFDREVRLREHMGEKYTTYSVKARQLKFFEENMNF

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




ANP_B_9(2A19)
E2AK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




ADP_A_6(3C4Z)
RK_BOVIN
[Raw transfer]




ADP_A_2(3F61)
PKNB_MYCTU
[Raw transfer]




ANP_A_7(3COK)
PLK4_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




ANP_A_7(2ACX)
GRK6_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




631_A_2(4JXF)
PLK4_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




4J7_A_2(4YUR)
PLK4_HUMAN
[Raw transfer]




ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




3D9_A_5(4U44)
M4K4_HUMAN
[Raw transfer]




3DC_A_5(4U45)
M4K4_HUMAN
[Raw transfer]




9ZP_A_2(4B6L)
PLK3_HUMAN
[Raw transfer]




A9U_A_4(4A9U)
CHK2_HUMAN
[Raw transfer]




4P4_A_5(4ZK5)
?
[Raw transfer]




A9T_A_2(4A9T)
CHK2_HUMAN
[Raw transfer]




2QV_A_5(4OBO)
M4K4_HUMAN
[Raw transfer]




ANP_C_10(2A19)
E2AK2_HUMAN
[Raw transfer]




3D8_A_3(4U43)
M4K4_HUMAN
[Raw transfer]




3XM_A_3(4RVT)
M4K4_HUMAN
[Raw transfer]




2QU_A_5(4OBP)
M4K4_HUMAN
[Raw transfer]




2QT_A_5(4OBQ)
M4K4_HUMAN
[Raw transfer]




EDO_A_3(4JXF)
PLK4_HUMAN
[Raw transfer]




21 PsiBlast_CBE 79.9250%-110 - C1 -4B9D 4.8 NEK1_HUMAN
115 HHSearch 76.6345%-101 - C1 -4B9D 5.6 NEK1_HUMAN
11 PsiBlast_PDB 71.6940%-113 - C1 -2XKD 6.9 NEK2_HUMAN
3 PsiBlast_PDB 71.2840%-111 - C1 -2W5A 5.4 NEK2_HUMAN
116 HHSearch 71.0342%-106 - C1 -2W5A 5.4 NEK2_HUMAN
12 PsiBlast_PDB 71.0340%-110 - C1 -2XKF 6.1 NEK2_HUMAN
19 PsiBlast_PDB 70.9840%-103 - C1 -2W5B 4.7 NEK2_HUMAN
7 PsiBlast_PDB 70.8540%-109 - C1 -2XK6 6.5 NEK2_HUMAN
8 PsiBlast_PDB 70.7640%-109 - C1 -2XK7 6.3 NEK2_HUMAN
9 PsiBlast_PDB 70.5940%-110 - C1 -2XK8 6.5 NEK2_HUMAN
18 PsiBlast_PDB 70.4440%-112 - C1 -2JAV 6.3 NEK2_HUMAN
14 PsiBlast_PDB 70.0440%-106 - C1 -2XNM 8.1 NEK2_HUMAN
13 PsiBlast_PDB 69.9540%-114 - C1 -2XKE 6.5 NEK2_HUMAN
17 PsiBlast_PDB 69.5940%-104 - C1 -2XNP 9.0 NEK2_HUMAN
16 PsiBlast_PDB 69.5140%-103 - C1 -2XNO 6.5 NEK2_HUMAN
10 PsiBlast_PDB 68.9140%-104 - C1 -2XKC 6.7 NEK2_HUMAN
4 PsiBlast_PDB 68.8740%-109 - C1 -2WQO 7.3 NEK2_HUMAN
6 PsiBlast_PDB 68.1040%-106 - C1 -2XK4 6.9 NEK2_HUMAN
5 PsiBlast_PDB 68.0540%-107 - C1 -2XK3 6.4 NEK2_HUMAN
15 PsiBlast_PDB 65.9540%-101 - C1 -2XNN 6.7 NEK2_HUMAN
2 PsiBlast_PDB 64.1540%-100 - C1 -2WQN 3.7 NEK7_HUMAN
46 PsiBlast_CBE 57.0231%-103 - C1 -3COK 6.8 PLK4_HUMAN
74 PsiBlast_CBE 56.9431% -84 - C1 -4B6L 7.7 PLK3_HUMAN
120 HHSearch 56.3731%-102 - C1 -4OBO 5.9 M4K4_HUMAN
55 PsiBlast_CBE 56.3632% -84 - C1 -4ZK5 7.2 ?
103 PsiBlast_CBE 56.3531%-103 - C1 -4A9U 3.3 CHK2_HUMAN
58 PsiBlast_CBE 56.1832% -81 - C1 -4U44 6.3 M4K4_HUMAN
104 PsiBlast_CBE 56.0731% -98 - C1 -4A9T 3.7 CHK2_HUMAN
45 PsiBlast_CBE 55.7331% -97 - C1 -4YUR 3.6 PLK4_HUMAN
57 PsiBlast_CBE 55.6832% -79 - C1 -4U45 6.2 M4K4_HUMAN
121 HHSearch 55.3135% -77 - C1 -2A19 4.5 E2AK2_HUMAN
59 PsiBlast_CBE 55.1432% -82 - C1 -4U43 5.0 M4K4_HUMAN
61 PsiBlast_CBE 54.1532% -84 - C1 -4OBP 6.4 M4K4_HUMAN
54 PsiBlast_CBE 53.3031% -97 - C1 -4JXF 6.2 PLK4_HUMAN
73 PsiBlast_CBE 51.5832% -86 - C1 -4RVT 6.1 M4K4_HUMAN
60 PsiBlast_CBE 51.5132% -86 - C1 -4OBQ 6.1 M4K4_HUMAN
91 PsiBlast_CBE 50.6031% -69 - C1 -3F61 5.6 PKNB_MYCTU
23 PsiBlast_CBE 48.6732%-105 - C1 -2A19 4.1 E2AK2_HUMAN