@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NEK5_HUMAN: (2015-10-15 )
MDKYDVIKAIGQGAFGKAYLAKGKSDSKHCVIKEINFEKMPIQEKEASKKEVILLEKMKHPNIVAFFNSFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILGWFVQISLGLKHIHDRKILHRDIKAQNIFLSKNGMVAKLGDFGIARVLNNSMELARTCIGTPYYLSPEICQNKPYNNKTDIWSLGCVLYELCTLKHPFEGNNLQQLVLKICQAHFAPISPGFSRELHSLISQLFQVSPRDRPSINSILKRPFLENLIPKYLTPEVIQEEFSHMLICRAGAPASRHAGKVVQKCKIQKVRFQGKCPPRSRISVPIKRNAILHRNEWRPPAGAQKARSIKMIERPKIAAVCGHYDYYYAQLDMLRRRAHKPSYHPIPQENTGVEDYGQETRHGPSPSQWPAEYLQRKFEAQQYKLKVEKQLGLRPSSAEPNYNQRQELRSNGEEPRFQELPFRKNEMKEQEYWKQLEEIRQQYHNDMKEIRKKMGREPEENSKISHKTYLVKKSNLPVHQDASEGEAPVQMEFRSCCPGWSAMARSWLTATSASQDIEKDLKQMRLQNTKESKNPEQKYKAKKGVKFEINLDKCISDENILQEEEAMDIPNETLTFEDGMKFKEYECVKEHGDYTDKAFEKLHCPEAGFSTQTVAAVGNRRQWDGGAPQTLLQMMAVADITSTCPTGPDSESVLSVSRQEGKTKDPYSPVLILM

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




IE8_B_6(4BID)

[Raw transfer]




IE8_A_4(4BID)
M3K5_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




IE4_A_3(4BIC)
M3K5_HUMAN
[Raw transfer]




ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




IE6_A_4(4BIE)
M3K5_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




IE6_B_6(4BIE)

[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




BH9_B_5(4BHN)

[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




IE4_A_4(4BIC)

[Raw transfer]




631_A_2(4JXF)
PLK4_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




4J7_A_2(4YUR)
PLK4_HUMAN
[Raw transfer]




ATP_A_2(4FG7)
KCC1A_HUMAN
[Raw transfer]




STU_A_3(2CLQ)
M3K5_HUMAN
[Raw transfer]




STU_A_3(4BF2)
M3K5_HUMAN
[Raw transfer]




IEO_B_8(4BIB)

[Raw transfer]




STU_B_5(4BF2)

[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




ANP_A_7(3COK)
PLK4_HUMAN
[Raw transfer]




IEO_A_3(4BIB)
M3K5_HUMAN
[Raw transfer]




ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]




ANP_A_4(3HKO)
?
[Raw transfer]




STU_B_4(2CLQ)

[Raw transfer]




EDO_A_3(4JXF)
PLK4_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




21 PsiBlast_CBE 86.9562%-115 - C2 -4B9D 5.6 NEK1_HUMAN
2 PsiBlast_PDB 86.4362%-117 - C2 -4B9D 5.1 NEK1_HUMAN
73 HHSearch 84.5057%-117 - C2 -4B9D 5.1 NEK1_HUMAN
74 HHSearch 76.7842%-110 - C2 -2W5A 6.0 NEK2_HUMAN
3 PsiBlast_PDB 76.0341%-111 - C2 -2W5A 6.0 NEK2_HUMAN
13 PsiBlast_PDB 74.3241%-117 - C2 -2XKE 5.9 NEK2_HUMAN
12 PsiBlast_PDB 74.0741%-113 - C2 -2XKF 6.1 NEK2_HUMAN
11 PsiBlast_PDB 74.0541%-115 - C2 -2XKD 6.5 NEK2_HUMAN
14 PsiBlast_PDB 73.9641%-111 - C2 -2XNM 7.7 NEK2_HUMAN
18 PsiBlast_PDB 73.8241%-119 - C2 -2JAV 6.6 NEK2_HUMAN
8 PsiBlast_PDB 72.7341%-111 - C2 -2XK7 6.4 NEK2_HUMAN
19 PsiBlast_PDB 72.2241%-108 - C2 -2W5B 5.7 NEK2_HUMAN
9 PsiBlast_PDB 72.1841%-112 - C2 -2XK8 7.0 NEK2_HUMAN
16 PsiBlast_PDB 72.0941%-108 - C2 -2XNO 5.8 NEK2_HUMAN
4 PsiBlast_PDB 71.8441%-111 - C2 -2WQO 7.1 NEK2_HUMAN
17 PsiBlast_PDB 71.4441%-107 - C2 -2XNP 9.2 NEK2_HUMAN
15 PsiBlast_PDB 71.3241%-105 - C2 -2XNN 6.1 NEK2_HUMAN
5 PsiBlast_PDB 71.3041%-107 - C2 -2XK3 5.7 NEK2_HUMAN
7 PsiBlast_PDB 70.7441%-109 - C2 -2XK6 5.9 NEK2_HUMAN
6 PsiBlast_PDB 70.6541%-108 - C2 -2XK4 7.2 NEK2_HUMAN
10 PsiBlast_PDB 69.8541%-105 - C2 -2XKC 6.7 NEK2_HUMAN
23 PsiBlast_CBE 66.7736%-109 - C2 -2WQN 3.8 NEK7_HUMAN
80 HHSearch 66.7130% -91 - C2 -3HKO 5.1 ?
47 PsiBlast_CBE 63.9833% -98 - C2 -4BIC 4.9
41 PsiBlast_CBE 63.4333% -99 - C2 -4BF2 3.4
42 PsiBlast_CBE 63.0933%-102 - C2 -4BF2 3.5 M3K5_HUMAN
34 PsiBlast_CBE 62.6734% -98 - C2 -2CLQ 3.9
48 PsiBlast_CBE 62.1933% -99 - C2 -4BIC 5.2 M3K5_HUMAN
35 PsiBlast_CBE 62.0734% -96 - C2 -2CLQ 3.5 M3K5_HUMAN
45 PsiBlast_CBE 61.8433%-100 - C2 -4BID 6.2
44 PsiBlast_CBE 61.6733% -99 - C2 -4BIE 5.3 M3K5_HUMAN
43 PsiBlast_CBE 61.6633% -98 - C2 -4BIE 5.4
46 PsiBlast_CBE 61.6033%-104 - C2 -4BID 6.4 M3K5_HUMAN
49 PsiBlast_CBE 61.2533% -98 - C2 -4BIB 4.1
58 PsiBlast_CBE 60.8931%-110 - C2 -4FG7 3.9 KCC1A_HUMAN
50 PsiBlast_CBE 60.8233% -98 - C2 -4BIB 3.9 M3K5_HUMAN
40 PsiBlast_CBE 59.9533% -96 - C2 -4BHN 4.1
30 PsiBlast_CBE 58.2332% -98 - C2 -4YUR 3.8 PLK4_HUMAN
31 PsiBlast_CBE 57.9032% -98 - C2 -3COK 6.4 PLK4_HUMAN
82 HHSearch 56.6431% -99 - C2 -1ZY4 2.6 GCN2_YEAST
32 PsiBlast_CBE 55.3732% -99 - C2 -4JXF 5.9 PLK4_HUMAN