@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NEK8_HUMAN: (2015-10-15 )
MEKYERIRVVGRGAFGIVHLCLRKADQKLVIIKQIPVEQMTKEERQAAQNECQVLKLLNHPNVIEYYENFLEDKALMIAMEYAPGGTLAEFIQKRCNSLLEEETILHFFVQILLALHHVHTHLILHRDLKTQNILLDKHRMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPELRQLVLSLLSLEPAQRPPLSHIMAQPLCIRALLNLHTDVGSVRMRRAEKSVAPSNTGSRTTSVRCRGIPRGPVRPAIPPPLSSVYAWGGGLGTPLRLPMLNTEVVQVAAGRTQKAGVTRSGRLILWEAPPLGAGGGSLLPGAVEQPQPQFISRFLEGQSGVTIKHVACGDFFTACLTDRGIIMTFGSGSNGCLGHGSLTDISQPTIVEALLGYEMVQVACGASHVLALSTERELFAWGRGDSGRLGLGTRESHSCPQQVPMPPGQEAQRVVCGIDSSMILTVPGQALACGSNRFNKLGLDHLSLGEEPVPHQQVEEALSFTLLGSAPLDQEPLLSIDLGTAHSAAVTASGDCYTFGSNQHGQLGTNTRRGSRAPCKVQGLEGIKMAMVACGDAFTVAIGAESEVYSWGKGARGRLGRRDEDAGLPRPVQLDETHPYTVTSVSCCHGNTLLAVRSVTDEPVPP

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




631_A_2(4JXF)
PLK4_HUMAN
[Raw transfer]




ANP_B_9(2A19)
E2AK2_HUMAN
[Raw transfer]




IE8_A_4(4BID)
M3K5_HUMAN
[Raw transfer]




GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]




IE8_B_6(4BID)

[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




IE4_A_4(4BIC)

[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




IE6_B_6(4BIE)

[Raw transfer]




ANP_A_7(3COK)
PLK4_HUMAN
[Raw transfer]




4J7_A_2(4YUR)
PLK4_HUMAN
[Raw transfer]




IE4_A_3(4BIC)
M3K5_HUMAN
[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




IE6_A_4(4BIE)
M3K5_HUMAN
[Raw transfer]




BH9_B_5(4BHN)

[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




STU_A_3(2CLQ)
M3K5_HUMAN
[Raw transfer]




IEO_B_8(4BIB)

[Raw transfer]




STU_B_5(4BF2)

[Raw transfer]




IEO_A_3(4BIB)
M3K5_HUMAN
[Raw transfer]




STU_A_3(4BF2)
M3K5_HUMAN
[Raw transfer]




STU_B_4(2CLQ)

[Raw transfer]




EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]




EDO_A_3(4JXF)
PLK4_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




18 PsiBlast_PDB 75.3939%-146 - C3 -2JAV 5.7 NEK2_HUMAN
12 PsiBlast_PDB 73.0139%-135 - C3 -2XKF 3.8 NEK2_HUMAN
13 PsiBlast_PDB 72.5039%-139 - C3 -2XKE 4.1 NEK2_HUMAN
14 PsiBlast_PDB 72.4739%-133 - C3 -2XNM 5.4 NEK2_HUMAN
8 PsiBlast_PDB 72.4439%-135 - C3 -2XK7 4.2 NEK2_HUMAN
7 PsiBlast_PDB 72.2639%-133 - C3 -2XK6 4.0 NEK2_HUMAN
3 PsiBlast_PDB 71.7339%-128 - C3 -2W5A 5.6 NEK2_HUMAN
4 PsiBlast_PDB 71.5539%-136 - C3 -2WQO 6.1 NEK2_HUMAN
128 HHSearch 71.0741%-127 - C3 -2W5A 2.2 NEK2_HUMAN
19 PsiBlast_PDB 70.8739%-130 - C3 -2W5B 5.1 NEK2_HUMAN
10 PsiBlast_PDB 70.6639%-133 - C3 -2XKC 5.6 NEK2_HUMAN
9 PsiBlast_PDB 70.5639%-133 - C3 -2XK8 5.0 NEK2_HUMAN
11 PsiBlast_PDB 70.3939%-135 - C3 -2XKD 5.9 NEK2_HUMAN
5 PsiBlast_PDB 70.2839%-130 - C3 -2XK3 5.6 NEK2_HUMAN
16 PsiBlast_PDB 70.0339%-132 - C3 -2XNO 4.9 NEK2_HUMAN
17 PsiBlast_PDB 70.0239%-126 - C3 -2XNP 6.9 NEK2_HUMAN
6 PsiBlast_PDB 69.5339%-129 - C3 -2XK4 5.5 NEK2_HUMAN
15 PsiBlast_PDB 68.9739%-130 - C3 -2XNN 4.8 NEK2_HUMAN
23 PsiBlast_CBE 66.4540%-139 - C3 -2WQN 4.7 NEK7_HUMAN
134 HHSearch 59.1233%-123 - C3 -1ZY4 2.5 GCN2_YEAST
49 PsiBlast_CBE 55.6931%-124 - C3 -3COK 6.0 PLK4_HUMAN
48 PsiBlast_CBE 54.8731%-121 - C3 -4YUR 4.3 PLK4_HUMAN
65 PsiBlast_CBE 54.8331%-122 - C3 -4JXF 8.2 PLK4_HUMAN
58 PsiBlast_CBE 53.6931%-117 - C3 -4BIC 5.2
59 PsiBlast_CBE 53.6231%-117 - C3 -4BIC 3.8 M3K5_HUMAN
55 PsiBlast_CBE 53.3931%-120 - C3 -4BIE 5.5 M3K5_HUMAN
60 PsiBlast_CBE 52.5431%-116 - C3 -4BIB 4.5
63 PsiBlast_CBE 52.1631%-120 - C3 -4BF2 6.6
137 HHSearch 51.9832%-107 - C3 -2A19 3.8 E2AK2_HUMAN
62 PsiBlast_CBE 51.7731%-112 - C3 -4BHN 5.2
56 PsiBlast_CBE 51.2831%-116 - C3 -4BID 7.0
57 PsiBlast_CBE 50.9631%-121 - C3 -4BID 7.6 M3K5_HUMAN
61 PsiBlast_CBE 50.7931%-113 - C3 -4BIB 4.5 M3K5_HUMAN
54 PsiBlast_CBE 50.7931%-114 - C3 -4BIE 5.8
64 PsiBlast_CBE 50.5831%-121 - C3 -4BF2 6.2 M3K5_HUMAN
43 PsiBlast_CBE 49.4332%-111 - C3 -2CLQ 6.7 M3K5_HUMAN
42 PsiBlast_CBE 48.7032%-112 - C3 -2CLQ 6.7