@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : NIM1_HUMAN: (2015-10-15 )
MTAVYMNGGGLVNPHYARWDRRDSVESGCQTESSKEGEEGQPRQLTPFEKLTQDMSQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSNTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYIGIYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYSVPPHVSEPCHRLIRGVLQQIPTERYGIDCIMNDEWMQGVPYPTPLEPFQLDPKHLSETSTLKEEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQRKKALESVPVMMLPDPKERDLKKGSRVYRGIRHTSKFCSIL

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(2YEX)
CHK1_HUMAN
[Raw transfer]




ANP_A_2(4BL1)
MELK_HUMAN
[Raw transfer]




ATP_A_3(4FG8)
KCC1A_HUMAN
[Raw transfer]




ATP_A_2(4FG7)
KCC1A_HUMAN
[Raw transfer]




ATP_B_4(4FG8)
KCC1A_HUMAN
[Raw transfer]




ADP_A_6(3C4Z)
RK_BOVIN
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




YCF_A_2(2YCF)
CHK2_HUMAN
[Raw transfer]




STU_A_4(4RER)
AAPK1_HUMAN
[Raw transfer]




STU_A_7(1NXK)
MAPK2_HUMAN
[Raw transfer]




HCW_A_2(2YCR)
CHK2_HUMAN
[Raw transfer]




DXR_B_4(3MA6)
?
[Raw transfer]




YIR_A_2(2YIR)
CHK2_HUMAN
[Raw transfer]




UPX_A_2(2YCQ)
CHK2_HUMAN
[Raw transfer]




YIQ_A_2(2YIQ)
CHK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




H3R_A_2(4BDF)
CHK2_HUMAN
[Raw transfer]




1WS_A_2(4BKZ)
MELK_HUMAN
[Raw transfer]




DXR_A_3(3MA6)
?
[Raw transfer]




Z2M_A_2(4BDJ)
CHK2_HUMAN
[Raw transfer]




NXP_A_2(2YCS)
CHK2_HUMAN
[Raw transfer]




ZAT_A_2(2W0J)
CHK2_HUMAN
[Raw transfer]




YIT_A_2(2YIT)
CHK2_HUMAN
[Raw transfer]




P3J_A_2(4BDG)
CHK2_HUMAN
[Raw transfer]




CWS_A_4(4BDE)
CHK2_HUMAN
[Raw transfer]




CPS_B_12(4CZT)
CIPKN_ARATH
[Raw transfer]




CPS_B_10(4CZU)
CIPKN_ARATH
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




CPS_C_16(4CZU)
CIPKN_ARATH
[Raw transfer]




RQQ_A_2(4BDK)
CHK2_HUMAN
[Raw transfer]




J60_A_6(2JAM)
KCC1G_HUMAN
[Raw transfer]




CPS_A_5(4CZT)
CIPKN_ARATH
[Raw transfer]




J60_B_10(2JAM)
KCC1G_HUMAN
[Raw transfer]




CPS_A_5(4CZU)
CIPKN_ARATH
[Raw transfer]




ODH_A_2(4BDC)
CHK2_HUMAN
[Raw transfer]




Z0O_A_3(4BDD)
CHK2_HUMAN
[Raw transfer]




EDO_B_8(2JAM)
KCC1G_HUMAN
[Raw transfer]




EDO_A_5(2JAM)
KCC1G_HUMAN
[Raw transfer]




EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]




11 PsiBlast_PDB 82.1137%-102 - C1 -4RER 4.4 AAPK1_HUMAN
125 HHSearch 80.3436% -94 - C1 -4BKY 8.7 MELK_HUMAN
24 PsiBlast_CBE 78.6540%-110 - C1 -3AQV 7.2 AAPK2_HUMAN
19 PsiBlast_PDB 78.1839%-114 - C1 -4BKZ 6.0 MELK_HUMAN
17 PsiBlast_PDB 78.1539%-109 - C1 -4BL1 6.4 MELK_HUMAN
58 PsiBlast_CBE 76.9034%-124 - C1 -4FG8 5.0 KCC1A_HUMAN
60 PsiBlast_CBE 76.0434%-121 - C1 -4FG7 4.2 KCC1A_HUMAN
59 PsiBlast_CBE 71.3234%-129 - C1 -4FG8 5.4 KCC1A_HUMAN
102 PsiBlast_CBE 70.4435%-121 - C1 -2W0J 3.1 CHK2_HUMAN
97 PsiBlast_CBE 68.8535%-116 - C1 -2YIT 4.1 CHK2_HUMAN
100 PsiBlast_CBE 68.5835%-119 - C1 -2YCS 4.3 CHK2_HUMAN
40 PsiBlast_CBE 67.9736%-106 - C1 -4CZT - CIPKN_ARATH
96 PsiBlast_CBE 67.5635%-119 - C1 -2YCR 4.4 CHK2_HUMAN
42 PsiBlast_CBE 67.4136%-108 - C1 -4CZT 4.4 CIPKN_ARATH
43 PsiBlast_CBE 67.2136%-102 - C1 -4CZT 3.4 CIPKN_ARATH
46 PsiBlast_CBE 67.1836%-108 - C1 -4CZU 4.6 CIPKN_ARATH
45 PsiBlast_CBE 66.7636%-110 - C1 -4CZU 4.4 CIPKN_ARATH
47 PsiBlast_CBE 66.6036%-106 - C1 -4CZU 5.0 CIPKN_ARATH
109 PsiBlast_CBE 66.4235%-120 - C1 -4BDF 3.7 CHK2_HUMAN
101 PsiBlast_CBE 66.2335%-114 - C1 -2YCQ 4.5 CHK2_HUMAN
98 PsiBlast_CBE 65.9535%-120 - C1 -2YIR 5.7 CHK2_HUMAN
95 PsiBlast_CBE 65.8933%-109 - C1 -3MA6 4.1 ?
103 PsiBlast_CBE 65.4135%-111 - C1 -2YCF 5.5 CHK2_HUMAN
44 PsiBlast_CBE 65.3536%-105 - C1 -4CZU - CIPKN_ARATH
104 PsiBlast_CBE 65.3035%-120 - C1 -4BDK 3.0 CHK2_HUMAN
111 PsiBlast_CBE 65.2535%-126 - C1 -4BDD 4.7 CHK2_HUMAN
99 PsiBlast_CBE 65.0335%-116 - C1 -2YIQ 3.8 CHK2_HUMAN
112 PsiBlast_CBE 64.8735%-124 - C1 -4BDC 2.2 CHK2_HUMAN
108 PsiBlast_CBE 64.8135%-117 - C1 -4BDG 3.5 CHK2_HUMAN
110 PsiBlast_CBE 64.5435%-124 - C1 -4BDE 4.5 CHK2_HUMAN
94 PsiBlast_CBE 63.9533%-108 - C1 -3MA6 4.1 ?
105 PsiBlast_CBE 63.4835%-122 - C1 -4BDJ 4.5 CHK2_HUMAN
41 PsiBlast_CBE 63.3936%-113 - C1 -4CZT - CIPKN_ARATH
56 PsiBlast_CBE 63.2436%-105 - C1 -2JAM 4.9 KCC1G_HUMAN
135 HHSearch 62.3433% -95 - C1 -1NXK 6.1 MAPK2_HUMAN
57 PsiBlast_CBE 61.3836%-108 - C1 -2JAM 4.8 KCC1G_HUMAN