@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PAK4_HUMAN: (2015-10-16 )
MFGKRKKRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESARRPKPLVDPACITSIQPGAPKTIVRGSKGAKDGALTLLLDEFENMSVTRSNSLRRDSPPPPARARQENGMPEEPATTARGGPGKAGSRGRFAGHSEAGGGSGDRRRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR

Atome Classification :

(83 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NJD_A_2(4NJD)
PAK4_HUMAN
[Raw transfer]




4T6_A_2(5BMS)

[Raw transfer]




X4Z_A_3(4O0R)
PAK1_HUMAN
[Raw transfer]




2OL_A_2(4O0V)

[Raw transfer]




X4Z_A_3(4KS7)

[Raw transfer]




4T6_B_5(4ZY6)
PAK1_HUMAN
[Raw transfer]




2OO_A_2(4O0Y)

[Raw transfer]




GVD_B_11(3GGF)
STK26_HUMAN
[Raw transfer]




4T6_A_3(4ZY6)
PAK1_HUMAN
[Raw transfer]




IE4_A_4(4BIC)

[Raw transfer]




IE4_A_3(4BIC)
M3K5_HUMAN
[Raw transfer]




4T3_A_3(4ZY4)
PAK1_HUMAN
[Raw transfer]




ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]




ATP_A_3(5D9H)
?
[Raw transfer]




2OQ_A_2(4O0X)
?
[Raw transfer]




4T3_B_5(4ZY4)
PAK1_HUMAN
[Raw transfer]




ANP_B_6(4FIF)
PAK4_HUMAN
[Raw transfer]




IE6_A_4(4BIE)
M3K5_HUMAN
[Raw transfer]




IE6_B_6(4BIE)

[Raw transfer]




ANP_A_3(4JDI)
PAK4_HUMAN
[Raw transfer]




GVD_A_7(3GGF)
STK26_HUMAN
[Raw transfer]




ANP_A_3(4FIG)
?
[Raw transfer]




ANP_B_6(4FIG)
?
[Raw transfer]




4T5_B_6(4ZY5)
PAK1_HUMAN
[Raw transfer]




GW8_A_7(4AOT)
STK10_HUMAN
[Raw transfer]




23D_A_2(2CDZ)
PAK4_HUMAN
[Raw transfer]




GOL_B_3(4FZA)
STK26_HUMAN
[Raw transfer]




ADP_B_4(4O27)
STK24_HUMAN
[Raw transfer]




IE8_A_4(4BID)
M3K5_HUMAN
[Raw transfer]




6UI_A_3(4USF)
?
[Raw transfer]




GVD_A_9(2UV2)
SLK_HUMAN
[Raw transfer]




STU_A_3(2CLQ)
M3K5_HUMAN
[Raw transfer]




IE8_B_6(4BID)

[Raw transfer]




GW8_B_10(4AOT)
STK10_HUMAN
[Raw transfer]




23D_B_5(2F57)

[Raw transfer]




STU_B_5(4BF2)

[Raw transfer]




DKI_B_3(4FZF)
?
[Raw transfer]




R09_B_4(4USE)
?
[Raw transfer]




2OL_A_3(4O0T)
PAK1_HUMAN
[Raw transfer]




2K0_B_4(4P90)
PAK1_HUMAN
[Raw transfer]




B49_A_2(4KS8)

[Raw transfer]




ANP_B_7(3DAK)
OXSR1_HUMAN
[Raw transfer]




ATP_B_7(5D9H)
?
[Raw transfer]




274_A_10(2J7T)
STK10_HUMAN
[Raw transfer]




STU_A_3(4BF2)
M3K5_HUMAN
[Raw transfer]




G6I_B_6(4EQU)
STK10_HUMAN
[Raw transfer]




STU_B_4(2CLQ)

[Raw transfer]




G6I_A_3(4EQU)
STK10_HUMAN
[Raw transfer]




ANP_A_5(3DAK)
OXSR1_HUMAN
[Raw transfer]




R09_A_3(4USE)
?
[Raw transfer]




GOL_B_4(4FZD)
STK26_HUMAN
[Raw transfer]




6UI_B_4(4USF)
?
[Raw transfer]




ANP_C_9(3DAK)
OXSR1_HUMAN
[Raw transfer]




4P4_A_5(4ZK5)
?
[Raw transfer]




3DC_A_5(4U45)
M4K4_HUMAN
[Raw transfer]




BH9_B_5(4BHN)

[Raw transfer]




3D8_A_3(4U43)
M4K4_HUMAN
[Raw transfer]




IEO_A_3(4BIB)
M3K5_HUMAN
[Raw transfer]




ANP_D_11(3DAK)
OXSR1_HUMAN
[Raw transfer]




R09_B_4(4USD)
?
[Raw transfer]




IEO_B_8(4BIB)

[Raw transfer]




2QV_A_5(4OBO)
M4K4_HUMAN
[Raw transfer]




2QU_A_5(4OBP)
M4K4_HUMAN
[Raw transfer]




2QT_A_5(4OBQ)
M4K4_HUMAN
[Raw transfer]




DKI_A_13(2J51)
SLK_HUMAN
[Raw transfer]




J60_B_3(4NZW)
STK25_HUMAN
[Raw transfer]




3D9_A_5(4U44)
M4K4_HUMAN
[Raw transfer]




3XM_A_3(4RVT)
M4K4_HUMAN
[Raw transfer]




ANP_A_4(3Q4Z)
PAK1_HUMAN
[Raw transfer]




ANP_D_20(2VWI)
OXSR1_HUMAN
[Raw transfer]




DB8_A_3(5AJQ)
STK10_HUMAN
[Raw transfer]




EDO_A_5(2J0I)
PAK4_HUMAN
[Raw transfer]




XZN_A_2(4BC6)
STK10_HUMAN
[Raw transfer]




4OR_D_9(4ZJJ)
PAK1_HUMAN
[Raw transfer]




EDO_A_9(2Q0N)
PAK4_HUMAN
[Raw transfer]




4OQ_D_9(4ZJI)
?
[Raw transfer]




4OQ_B_6(4ZJI)
PAK1_HUMAN
[Raw transfer]




4OR_A_5(4ZJJ)
PAK1_HUMAN
[Raw transfer]




4OQ_C_7(4ZJI)
?
[Raw transfer]




4OR_B_6(4ZJJ)
PAK1_HUMAN
[Raw transfer]




4OQ_A_5(4ZJI)
PAK1_HUMAN
[Raw transfer]




4OR_C_7(4ZJJ)
PAK1_HUMAN
[Raw transfer]




TRS_A_4(2F57)
PAK7_HUMAN
[Raw transfer]




DMS_B_6(4ZY4)
PAK1_HUMAN
[Raw transfer]




DMS_B_7(4ZY5)
PAK1_HUMAN
[Raw transfer]




21 PsiBlast_CBE 97.1499%-125 - C3 -4FIG 5.9 ?
12 PsiBlast_PDB 96.9199%-132 - C3 -2J0I 3.5 PAK4_HUMAN
22 PsiBlast_CBE 96.6199%-126 - C3 -4FIF 6.0 PAK4_HUMAN
10 PsiBlast_PDB 96.5299%-128 - C3 -2Q0N 2.5 PAK4_HUMAN
25 PsiBlast_CBE 95.9684%-135 - C3 -2F57 4.0 PAK7_HUMAN
11 PsiBlast_PDB 95.9399%-131 - C3 -2CDZ 6.5 PAK4_HUMAN
19 PsiBlast_PDB 95.9299%-128 - C3 -4O0X 9.3 ?
7 PsiBlast_PDB 95.5399%-127 - C3 -4JDI 7.5 PAK4_HUMAN
2 PsiBlast_PDB 95.4799%-128 - C3 -4FIG 6.5 ?
18 PsiBlast_PDB 95.4399%-128 - C3 -4O0V 8.5
15 PsiBlast_PDB 95.3399%-128 - C3 -4NJD 7.5 PAK4_HUMAN
1 PsiBlast_PDB 95.1999%-125 - C3 -4FIF 5.9 PAK4_HUMAN
20 PsiBlast_PDB 94.3599%-125 - C3 -4O0Y 8.0
24 PsiBlast_CBE 94.0484%-125 - C3 -2F57 5.8
28 PsiBlast_CBE 90.6875%-128 - C3 -4KS7 7.2
27 PsiBlast_CBE 88.1575%-128 - C3 -4KS8 6.3
40 PsiBlast_CBE 84.2953%-132 - C3 -4ZY4 5.6 PAK1_HUMAN
45 PsiBlast_CBE 83.4053%-130 - C3 -4O0R 6.8 PAK1_HUMAN
39 PsiBlast_CBE 81.6953%-134 - C3 -4ZY5 5.4 PAK1_HUMAN
44 PsiBlast_CBE 81.1653%-124 - C3 -4O0T 8.5 PAK1_HUMAN
41 PsiBlast_CBE 80.3953%-131 - C3 -4ZY4 5.5 PAK1_HUMAN
47 PsiBlast_CBE 80.2452%-132 - C3 -3Q4Z 5.8 PAK1_HUMAN
38 PsiBlast_CBE 80.2353%-131 - C3 -4ZY6 6.3 PAK1_HUMAN
37 PsiBlast_CBE 79.3253%-133 - C3 -4ZY6 6.7 PAK1_HUMAN
23 PsiBlast_CBE 79.0599% -85 - C3 -5BMS 6.5
32 PsiBlast_CBE 78.9253%-136 - C3 -4ZJJ 8.8 PAK1_HUMAN
31 PsiBlast_CBE 78.8253%-136 - C3 -4ZJJ 9.0 PAK1_HUMAN
36 PsiBlast_CBE 78.5853%-134 - C3 -4ZJI 6.7 PAK1_HUMAN
35 PsiBlast_CBE 78.2753%-136 - C3 -4ZJI 7.1 PAK1_HUMAN
34 PsiBlast_CBE 78.2453%-131 - C3 -4ZJI 7.6 ?
33 PsiBlast_CBE 77.9353%-130 - C3 -4ZJI 7.5 ?
48 PsiBlast_CBE 76.7453%-136 - C3 -4P90 6.6 PAK1_HUMAN
29 PsiBlast_CBE 74.9453%-141 - C3 -4ZJJ 9.4 PAK1_HUMAN
30 PsiBlast_CBE 72.4453%-132 - C3 -4ZJJ 8.0 PAK1_HUMAN
72 PsiBlast_CBE 71.8234%-130 - C3 -4USF 7.3 ?
87 PsiBlast_CBE 71.5537%-123 - C3 -4ZK5 6.3 ?
90 PsiBlast_CBE 71.2937%-124 - C3 -4U44 6.6 M4K4_HUMAN
85 PsiBlast_CBE 71.2935%-126 - C3 -5AJQ 6.6 STK10_HUMAN
89 PsiBlast_CBE 70.3737%-118 * C3 *4U45 6.0 M4K4_HUMAN
91 PsiBlast_CBE 70.2437%-122 - C3 -4U43 4.4 M4K4_HUMAN
93 PsiBlast_CBE 70.0137%-127 - C3 -4OBP 5.6 M4K4_HUMAN
71 PsiBlast_CBE 69.9434%-127 - C3 -4USF 7.2 ?
60 PsiBlast_CBE 69.8937%-110 - C3 -4FZA 2.3 STK26_HUMAN
59 PsiBlast_CBE 69.8237%-121 - C3 -4FZD 2.1 STK26_HUMAN
68 PsiBlast_CBE 69.7637%-110 - C3 -4O27 5.2 STK24_HUMAN
66 PsiBlast_CBE 69.6938%-124 - C3 -3DAK 4.2 OXSR1_HUMAN
95 PsiBlast_CBE 69.6637%-129 - C3 -4OBO 5.5 M4K4_HUMAN
92 PsiBlast_CBE 69.6337%-123 - C3 -4OBQ 6.4 M4K4_HUMAN
64 PsiBlast_CBE 69.5738%-124 - C3 -3DAK 4.5 OXSR1_HUMAN
82 PsiBlast_CBE 69.4135%-125 - C3 -4AOT 9.0 STK10_HUMAN
65 PsiBlast_CBE 69.0738%-122 - C3 -3DAK 4.2 OXSR1_HUMAN
63 PsiBlast_CBE 68.7938%-127 - C3 -3DAK 4.9 OXSR1_HUMAN
57 PsiBlast_CBE 68.5437%-114 - C3 -3GGF 7.6 STK26_HUMAN
84 PsiBlast_CBE 68.5235%-128 - C3 -2J7T 7.1 STK10_HUMAN
83 PsiBlast_CBE 68.5035%-124 - C3 -4AOT 9.1 STK10_HUMAN
96 PsiBlast_CBE 68.1437%-126 - C3 -4RVT 4.9 M4K4_HUMAN
100 PsiBlast_CBE 68.0131%-123 - C3 -4BIE 4.4 M3K5_HUMAN
108 PsiBlast_CBE 67.6631%-122 - C3 -4BF2 7.6
79 PsiBlast_CBE 67.6535%-132 - C3 -4USD 8.7 ?
107 PsiBlast_CBE 67.5231%-119 - C3 -4BHN 4.7
61 PsiBlast_CBE 67.4838%-126 - C3 -2VWI 4.2 OXSR1_HUMAN
56 PsiBlast_CBE 67.2537%-114 - C3 -3GGF 7.9 STK26_HUMAN
105 PsiBlast_CBE 66.7331%-124 - C3 -4BIB 4.4
103 PsiBlast_CBE 66.7231%-124 - C3 -4BIC 5.3
78 PsiBlast_CBE 66.5935%-122 - C3 -4USE 6.9 ?
80 PsiBlast_CBE 66.4735%-124 - C3 -4EQU 12.5 STK10_HUMAN
102 PsiBlast_CBE 66.0331%-124 - C3 -4BID 8.7 M3K5_HUMAN
81 PsiBlast_CBE 65.9635%-126 - C3 -4EQU 12.6 STK10_HUMAN
86 PsiBlast_CBE 65.9035%-127 - C3 -4BC6 6.7 STK10_HUMAN
76 PsiBlast_CBE 65.7836%-110 - C3 -4NZW 5.4 STK25_HUMAN
69 PsiBlast_CBE 65.7234%-122 - C3 -2UV2 5.3 SLK_HUMAN
70 PsiBlast_CBE 65.6434%-119 - C3 -2J51 4.9 SLK_HUMAN
73 PsiBlast_CBE 65.6038%-118 - C3 -5D9H 5.1 ?
97 PsiBlast_CBE 65.5731%-122 - C3 -2CLQ 7.1
101 PsiBlast_CBE 64.8731%-122 - C3 -4BID 8.3
99 PsiBlast_CBE 64.8431%-124 - C3 -4BIE 4.2
77 PsiBlast_CBE 64.8335%-126 - C3 -4USE 6.6 ?
106 PsiBlast_CBE 64.8231%-119 - C3 -4BIB 4.7 M3K5_HUMAN
74 PsiBlast_CBE 64.7938%-115 - C3 -5D9H 6.3 ?
104 PsiBlast_CBE 64.7131%-120 - C3 -4BIC 4.3 M3K5_HUMAN
98 PsiBlast_CBE 64.4131%-119 - C3 -2CLQ 7.1 M3K5_HUMAN
109 PsiBlast_CBE 64.2231%-123 - C3 -4BF2 6.8 M3K5_HUMAN
58 PsiBlast_CBE 64.1037%-112 - C3 -4FZF 5.9 ?