@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PDK1_HUMAN: (2015-10-16 )
MRLARLLRGAALAGPGPGLRAAGFSRSFSSDSGSSPASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYNTNHEADDWCVPSREPKDMTTFRSA

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(2E0A)
PDK4_HUMAN
[Raw transfer]




ANP_A_5(2E0A)
PDK4_HUMAN
[Raw transfer]




ADP_B_7(2ZKJ)
PDK4_HUMAN
[Raw transfer]




ANP_B_6(2E0A)
PDK4_HUMAN
[Raw transfer]




ANP_A_5(4E01)
BCKD_RAT
[Raw transfer]




ANP_A_5(4E01)
BCKD_RAT
[Raw transfer]




ADP_B_6(3D2R)
PDK4_HUMAN
[Raw transfer]




ATP_A_7(1Y8P)
PDK3_HUMAN
[Raw transfer]




ADP_A_5(1JM6)
PDK2_RAT
[Raw transfer]




ADP_A_5(1JM6)
PDK2_RAT
[Raw transfer]




ANP_A_9(3CRL)
PDK2_RAT
[Raw transfer]




ANP_A_2(4E02)
BCKD_RAT
[Raw transfer]




ANP_B_10(3CRL)
PDK2_RAT
[Raw transfer]




ADP_A_4(2ZKJ)
PDK4_HUMAN
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ADP_A_4(2ZDY)
PDK4_HUMAN
[Raw transfer]




ADP_A_5(3D2R)
PDK4_HUMAN
[Raw transfer]




ADP_A_2(4DZY)
BCKD_RAT
[Raw transfer]




ADP_A_2(3TZ4)
BCKD_RAT
[Raw transfer]




ADP_B_6(1JM6)
PDK2_RAT
[Raw transfer]




ADP_A_2(4E00)
BCKD_RAT
[Raw transfer]




ADP_A_2(4H85)
BCKD_RAT
[Raw transfer]




SAP_A_9(1GJV)
BCKD_RAT
[Raw transfer]




ADP_A_2(3TZ5)
BCKD_RAT
[Raw transfer]




ADP_A_2(3VAD)
BCKD_RAT
[Raw transfer]




ADP_A_2(4H81)
BCKD_RAT
[Raw transfer]




ADP_A_2(4H7Q)
BCKD_RAT
[Raw transfer]




ADP_A_6(1GKZ)
BCKD_RAT
[Raw transfer]




ADP_A_6(1GKZ)
BCKD_RAT
[Raw transfer]




ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]




P4A_B_4(2ZDX)
PDK4_HUMAN
[Raw transfer]




SZ6_A_4(4V25)
PDK2_HUMAN
[Raw transfer]




P4A_A_3(2ZDX)
PDK4_HUMAN
[Raw transfer]




RDC_A_5(2Q8I)
PDK3_HUMAN
[Raw transfer]




7TJ_A_5(4V26)
PDK2_HUMAN
[Raw transfer]




TLA_A_3(4MP2)
PDK2_HUMAN
[Raw transfer]




14 PsiBlast_PDB 86.4768%-109 - C2 -1Y8P 8.1 PDK3_HUMAN
27 PsiBlast_CBE 85.8467%-111 - C2 -3D2R 7.9 PDK4_HUMAN
21 PsiBlast_CBE 85.7568%-111 - C2 -3CRL 5.6 PDK2_RAT
15 PsiBlast_PDB 85.6968%-112 - C2 -2Q8I 5.8 PDK3_HUMAN
23 PsiBlast_CBE 84.8768%-115 - C2 -1JM6 6.5 PDK2_RAT
28 PsiBlast_CBE 84.6767%-112 - C2 -2ZKJ 8.1 PDK4_HUMAN
18 PsiBlast_PDB 83.9767%-116 - C2 -3D2R 7.7 PDK4_HUMAN
13 PsiBlast_PDB 83.9368%-107 - C2 -3CRL 5.6 PDK2_RAT
29 PsiBlast_CBE 83.6567%-107 - C2 -2ZDY 7.0 PDK4_HUMAN
19 PsiBlast_PDB 83.5867%-111 - C2 -2E0A 9.0 PDK4_HUMAN
2 PsiBlast_PDB 83.5469%-107 - C2 -4MP2 3.7 PDK2_HUMAN
31 PsiBlast_CBE 83.3367%-109 - C2 -2E0A 8.4 PDK4_HUMAN
3 PsiBlast_PDB 83.3069%-113 - C2 -4V26 7.5 PDK2_HUMAN
17 PsiBlast_PDB 83.1367%-115 - C2 -2ZKJ 7.6 PDK4_HUMAN
20 PsiBlast_PDB 83.0967%-115 - C2 -2ZDX 4.4 PDK4_HUMAN
79 HHSearch 83.0867%-110 - C2 -2E0A 9.0 PDK4_HUMAN
10 PsiBlast_PDB 82.8269%-114 - C2 -4V25 6.5 PDK2_HUMAN
68 Fugue 82.5771%-114 - C2 -1JM6 6.4 PDK2_RAT
11 PsiBlast_PDB 82.5468%-116 - C2 -1JM6 6.4 PDK2_RAT
30 PsiBlast_CBE 81.6967%-110 - C2 -2ZDX 4.9 PDK4_HUMAN
80 HHSearch 66.4732%-109 - C2 -4E01 6.7 BCKD_RAT
36 PsiBlast_CBE 63.2533%-107 - C2 -4E01 6.7 BCKD_RAT
40 PsiBlast_CBE 63.0033%-106 - C2 -3TZ4 5.6 BCKD_RAT
46 PsiBlast_CBE 62.7432%-108 - C2 -3VAD 5.9 BCKD_RAT
38 PsiBlast_CBE 62.6733%-109 - C2 -4DZY 6.0 BCKD_RAT
37 PsiBlast_CBE 62.4033%-110 - C2 -4E00 5.5 BCKD_RAT
32 PsiBlast_CBE 62.2933%-105 - C2 -4H85 6.0 BCKD_RAT
35 PsiBlast_CBE 62.0433%-106 - C2 -4E02 6.6 BCKD_RAT
69 Fugue 61.8633%-100 - C2 -1GKZ 4.5 BCKD_RAT
34 PsiBlast_CBE 61.8433%-106 - C2 -4H7Q 5.4 BCKD_RAT
33 PsiBlast_CBE 61.3033%-108 - C2 -4H81 6.0 BCKD_RAT
39 PsiBlast_CBE 61.2033%-104 - C2 -3TZ5 6.5 BCKD_RAT
43 PsiBlast_CBE 61.0433%-104 - C2 -1GKZ 4.6 BCKD_RAT
45 PsiBlast_CBE 59.6933%-102 - C2 -1GJV 5.2 BCKD_RAT