@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PGFRA_HUMAN: (2015-10-16 )
MGTSHPAFLVLGCLLTGLSLILCQLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIRNEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPASYDSRQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKTVYKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENLTEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRVLGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAVARMRVDSDNAYIGVTYKNEEDKLKDWEGGLDEQRLSADSGYIIPLPDIDPVPEEEDLGKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIDMMDDIGIDSSDLVEDSFL

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P30_A_2(4RT7)

[Raw transfer]




42Q_A_2(3VHE)

[Raw transfer]




608_D_4(2P2I)

[Raw transfer]




706_B_4(3EFL)

[Raw transfer]




706_A_3(3EFL)
VGFR2_HUMAN
[Raw transfer]




STI_A_2(4R7I)
?
[Raw transfer]




03X_A_2(3U6J)

[Raw transfer]




C19_B_4(3CP9)

[Raw transfer]




BAX_A_2(3WZE)

[Raw transfer]




BAX_A_2(4ASD)

[Raw transfer]




STI_A_4(1T46)
?
[Raw transfer]




C92_A_3(3CPB)
VGFR2_HUMAN
[Raw transfer]




GOL_A_11(3WZD)

[Raw transfer]




64M_A_2(4HW7)

[Raw transfer]




647_A_2(4HVS)

[Raw transfer]




0LI_A_2(4U0I)

[Raw transfer]




BPK_A_2(3VHK)

[Raw transfer]




276_A_2(2QU5)

[Raw transfer]




C92_B_4(3CPB)

[Raw transfer]




0JA_A_2(3VNT)

[Raw transfer]




LEV_A_2(3WZD)

[Raw transfer]




857_B_5(2QU6)

[Raw transfer]




ADP_A_5(1PKG)
KIT_HUMAN
[Raw transfer]




2RL_A_2(2RL5)

[Raw transfer]




AXI_A_2(4AG8)

[Raw transfer]




AXI_A_2(4AGC)

[Raw transfer]




608_C_3(2P2I)
VGFR2_HUMAN
[Raw transfer]




0KF_A_2(3VO3)

[Raw transfer]




K11_A_2(3EWH)

[Raw transfer]




P31_A_2(4R7H)
?
[Raw transfer]




AAX_B_2(1Y6B)

[Raw transfer]




00J_A_2(2XIR)

[Raw transfer]




AV9_A_2(4ASE)

[Raw transfer]




C19_A_3(3CP9)
VGFR2_HUMAN
[Raw transfer]




900_B_4(3B8Q)

[Raw transfer]




0LI_A_9(4V04)
FGFR1_HUMAN
[Raw transfer]




C52_B_4(3CPC)

[Raw transfer]




AAZ_A_2(1Y6A)

[Raw transfer]




900_A_3(3B8Q)
VGFR2_HUMAN
[Raw transfer]




A96_A_3(3DTW)
VGFR2_HUMAN
[Raw transfer]




857_A_4(2QU6)
VGFR2_HUMAN
[Raw transfer]




887_B_5(3B8R)

[Raw transfer]




C52_A_3(3CPC)
VGFR2_HUMAN
[Raw transfer]




ADP_B_6(1PKG)

[Raw transfer]




IXH_A_5(3BEA)

[Raw transfer]




RAJ_A_2(3BE2)

[Raw transfer]




B49_A_3(3G0F)
?
[Raw transfer]




994_B_2(2P2H)

[Raw transfer]




5CN_B_2(2I1M)

[Raw transfer]




887_A_4(3B8R)
VGFR2_HUMAN
[Raw transfer]




B49_A_2(3G0E)
KIT_HUMAN
[Raw transfer]




B49_A_2(4AGD)

[Raw transfer]




B49_B_5(3G0F)
?
[Raw transfer]




KIM_A_4(3CJG)

[Raw transfer]




EDO_A_3(3VHK)

[Raw transfer]




EDO_A_3(3VNT)

[Raw transfer]




DTT_A_3(3WZD)

[Raw transfer]




1 PsiBlast_PDB 94.8948%-115 - C7 -4RT7 10.6
3 PsiBlast_PDB 94.2446%-106 - C7 -3VHK 6.6
4 PsiBlast_PDB 94.0346%-121 - C7 -1Y6A 6.2
2 PsiBlast_PDB 93.6346%-109 - C7 -3VHE 10.3
5 PsiBlast_PDB 93.2046%-117 - C7 -1Y6B 7.9
14 PsiBlast_PDB 67.6353% -71 - C7 -4R7H 5.7 ?
42 PsiBlast_CBE 67.5958% -94 - C7 -3B8R 3.2
51 PsiBlast_CBE 67.2458% -95 - C7 -3EFL 3.8
26 PsiBlast_CBE 67.1659% -91 - C7 -4AGD 3.3
27 PsiBlast_CBE 67.0959% -86 - C7 -4AGC 3.0
20 PsiBlast_PDB 66.5959% -87 - C7 -3VO3 4.3
47 PsiBlast_CBE 66.4158% -89 - C7 -2QU6 4.8
17 PsiBlast_PDB 66.3859% -87 - C7 -3EWH 5.3
29 PsiBlast_CBE 66.3459% -93 - C7 -3WZD 3.1
37 PsiBlast_CBE 66.2758% -90 - C7 -3CPB 3.6
48 PsiBlast_CBE 66.1258% -89 - C7 -2QU6 4.9 VGFR2_HUMAN
44 PsiBlast_CBE 66.1258% -88 - C7 -3B8Q 4.7
31 PsiBlast_CBE 66.0659% -88 - C7 -2XIR 3.3
30 PsiBlast_CBE 66.0259% -85 - C7 -4AG8 3.0
19 PsiBlast_PDB 66.0159% -86 - C7 -3VNT 4.4
53 PsiBlast_CBE 65.9958% -90 - C7 -2P2I 4.4
15 PsiBlast_PDB 65.9953% -70 - C7 -4R7I 6.9 ?
25 PsiBlast_CBE 65.9859% -86 - C7 -4ASD 5.1
6 PsiBlast_PDB 65.9153% -56 - C7 -4HVS 7.3
28 PsiBlast_CBE 65.9059% -88 - C7 -3WZE 5.1
56 PsiBlast_CBE 65.7654% -80 - C7 -4V04 5.8 FGFR1_HUMAN
24 PsiBlast_CBE 65.7459% -87 - C7 -4ASE 4.1
52 PsiBlast_CBE 65.7258% -84 - C7 -3EFL 4.1 VGFR2_HUMAN
54 PsiBlast_CBE 65.5658% -83 - C7 -2P2I 4.9 VGFR2_HUMAN
18 PsiBlast_PDB 65.4259% -87 - C7 -3U6J 5.3
13 PsiBlast_PDB 65.3553% -70 - C7 -4HW7 6.1
35 PsiBlast_CBE 65.2758% -90 - C7 -3CPC 4.7
46 PsiBlast_CBE 65.2358% -91 - C7 -2RL5 4.5
23 PsiBlast_CBE 65.2362% -81 - C7 -3BEA 4.4
45 PsiBlast_CBE 65.1558% -93 - C7 -3B8Q 4.6 VGFR2_HUMAN
36 PsiBlast_CBE 65.1558% -92 - C7 -3CPC 4.6 VGFR2_HUMAN
39 PsiBlast_CBE 65.0758% -88 - C7 -3CP9 6.8
41 PsiBlast_CBE 65.0158% -84 - C7 -3BE2 5.4
43 PsiBlast_CBE 64.9658% -93 - C7 -3B8R 3.3 VGFR2_HUMAN
40 PsiBlast_CBE 64.7958% -90 - C7 -3CP9 6.8 VGFR2_HUMAN
38 PsiBlast_CBE 64.6458% -92 - C7 -3CPB 3.3 VGFR2_HUMAN
50 PsiBlast_CBE 64.5258% -91 - C7 -2P2H 4.1
32 PsiBlast_CBE 64.4163% -77 - C7 -2I1M 3.9
49 PsiBlast_CBE 64.3658% -92 - C7 -2QU5 5.2
33 PsiBlast_CBE 64.2358% -90 - C7 -3CJG 4.3
34 PsiBlast_CBE 63.8158% -88 - C7 -3DTW 4.0 VGFR2_HUMAN
21 PsiBlast_CBE 63.4367% -75 - C7 -1PKG 5.6
7 PsiBlast_PDB 63.4267% -73 - C7 -1PKG 5.9 KIT_HUMAN
8 PsiBlast_PDB 63.1867% -74 - C7 -1T46 4.6 ?
22 PsiBlast_CBE 63.1466% -70 - C7 -3G0F 2.9 ?
9 PsiBlast_PDB 63.0567% -70 - C7 -4U0I 5.6
12 PsiBlast_PDB 62.5566% -69 - C7 -3G0F 2.6 ?
10 PsiBlast_PDB 62.3567% -76 - C7 -3G0E 2.8 KIT_HUMAN