@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : RAF1_HUMAN: (2015-10-17 )
MEHIQGAWKTISNGFGFKDAVFDGSSCISPTIVQQFGYQRRASDDGKLTDPSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSTIGDSGVPALPSLTMRRMRESVSRMPVSSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVDSRMIEDAIRSHSESASPSALSSSPNNLSPTGWSQPKTPVPAQRERAPVSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF

Atome Classification :

(86 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BR2_A_3(3SKC)
BRAF_HUMAN
[Raw transfer]




B0R_A_3(3TV6)
BRAF_HUMAN
[Raw transfer]




TV4_A_3(3TV4)
BRAF_HUMAN
[Raw transfer]




RI9_A_3(4EHG)
BRAF_HUMAN
[Raw transfer]




DFS_B_4(4MBJ)

[Raw transfer]




RI9_B_4(4EHG)

[Raw transfer]




L1E_A_4(3IDP)
BRAF_HUMAN
[Raw transfer]




BR2_B_4(3SKC)

[Raw transfer]




T1Q_A_3(4E4X)
BRAF_HUMAN
[Raw transfer]




RI8_A_3(4EHE)
BRAF_HUMAN
[Raw transfer]




0WP_B_4(4G9C)

[Raw transfer]




L1E_B_3(3IDP)

[Raw transfer]




B0R_B_4(3TV6)

[Raw transfer]




T1Q_B_4(4E4X)

[Raw transfer]




RI8_B_4(4EHE)

[Raw transfer]




2VX_A_3(4PP7)
BRAF_HUMAN
[Raw transfer]




TV4_B_4(3TV4)

[Raw transfer]




2VX_B_4(4PP7)

[Raw transfer]




55J_A_3(5CT7)
?
[Raw transfer]




55J_B_4(5CT7)
?
[Raw transfer]




CQE_B_4(4CQE)
?
[Raw transfer]




FNI_B_4(3PPK)

[Raw transfer]




032_A_3(3OG7)
BRAF_HUMAN
[Raw transfer]




032_A_3(3OG7)
BRAF_HUMAN
[Raw transfer]




FNI_A_3(3PPK)
BRAF_HUMAN
[Raw transfer]




0WP_A_3(4G9C)
BRAF_HUMAN
[Raw transfer]




CQE_A_3(4CQE)
?
[Raw transfer]




4Z5_A_3(5C9C)
?
[Raw transfer]




STI_A_2(4CSV)
?
[Raw transfer]




1SU_A_3(4KSP)
BRAF_HUMAN
[Raw transfer]




DFS_A_3(4MBJ)
BRAF_HUMAN
[Raw transfer]




324_A_3(3C4C)
BRAF_HUMAN
[Raw transfer]




SM6_A_3(3PSB)
BRAF_HUMAN
[Raw transfer]




NG7_B_6(4AGW)
SRC_CHICK
[Raw transfer]




BAX_A_3(1UWH)
BRAF_HUMAN
[Raw transfer]




FP4_B_4(3PRI)

[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




SM5_B_4(3D4Q)

[Raw transfer]




BAX_B_4(1UWH)

[Raw transfer]




NG7_A_3(4AGW)
SRC_CHICK
[Raw transfer]




29L_B_4(4MNF)

[Raw transfer]




29L_A_3(4MNF)
BRAF_HUMAN
[Raw transfer]




SM5_A_3(3D4Q)
BRAF_HUMAN
[Raw transfer]




SM5_B_4(3OMV)

[Raw transfer]




B96_C_7(4JVG)
BRAF_HUMAN
[Raw transfer]




B96_B_5(4JVG)
BRAF_HUMAN
[Raw transfer]




B1E_A_3(4G9R)
BRAF_HUMAN
[Raw transfer]




B1E_B_4(4G9R)

[Raw transfer]




STI_A_4(1T46)
?
[Raw transfer]




STI_B_6(3OEZ)
SRC_CHICK
[Raw transfer]




29L_A_3(4MNF)
BRAF_HUMAN
[Raw transfer]




BAX_B_4(1UWJ)

[Raw transfer]




10Z_A_4(4H58)
BRAF_HUMAN
[Raw transfer]




B96_A_6(4JVG)
BRAF_HUMAN
[Raw transfer]




BAX_A_3(1UWJ)
BRAF_HUMAN
[Raw transfer]




SM7_B_4(3PSD)

[Raw transfer]




SM7_A_3(3PSD)
BRAF_HUMAN
[Raw transfer]




324_B_4(4WO5)

[Raw transfer]




B96_D_8(4JVG)

[Raw transfer]




STI_A_3(3OEZ)
SRC_CHICK
[Raw transfer]




FP3_A_3(3PRF)
BRAF_HUMAN
[Raw transfer]




SM5_A_3(3OMV)
RAF1_HUMAN
[Raw transfer]




FP4_A_3(3PRI)
BRAF_HUMAN
[Raw transfer]




SM6_B_4(3PSB)

[Raw transfer]




FOI_A_3(3PPJ)
BRAF_HUMAN
[Raw transfer]




FOI_B_4(3PPJ)

[Raw transfer]




324_B_4(3C4C)

[Raw transfer]




FP3_B_4(3PRF)

[Raw transfer]




ANP_B_2(2SRC)
SRC_HUMAN
[Raw transfer]




PD5_A_3(3QLF)
SRC_CHICK
[Raw transfer]




RXT_B_4(4U5J)
SRC_CHICK
[Raw transfer]




831_A_3(3II5)
BRAF_HUMAN
[Raw transfer]




RXT_A_3(4U5J)
SRC_CHICK
[Raw transfer]




734_A_3(4E26)
BRAF_HUMAN
[Raw transfer]




831_B_6(3II5)

[Raw transfer]




I76_B_4(4DGG)
SRC_CHICK
[Raw transfer]




734_B_4(4E26)

[Raw transfer]




QB4_A_2(4CLJ)

[Raw transfer]




HET_B_2(2BDJ)
SRC_HUMAN
[Raw transfer]




ADN_A_2(2EVA)
M3K7_HUMAN
[Raw transfer]




ATP_B_3(2Y4I)

[Raw transfer]




STU_A_3(3P86)
CTR1_ARATH
[Raw transfer]




ATP_B_3(2Y4I)

[Raw transfer]




ADN_A_2(4CKJ)

[Raw transfer]




ACP_A_2(4UEU)
?
[Raw transfer]




RSW_A_3(3Q4C)
BRAF_HUMAN
[Raw transfer]




21 PsiBlast_CBE 86.90100%-119 - C2 -3OMV 6.1
1 PsiBlast_PDB 86.27100%-118 - C2 -3OMV 4.8 RAF1_HUMAN
52 PsiBlast_CBE 82.8580%-113 - C2 -5CT7 11.7 ?
50 PsiBlast_CBE 82.4180%-110 - C2 -4KSP 9.6 BRAF_HUMAN
51 PsiBlast_CBE 82.1080%-113 - C2 -5CT7 11.5 ?
53 PsiBlast_CBE 81.5880%-114 - C2 -4H58 7.0 BRAF_HUMAN
15 PsiBlast_PDB 81.3477%-116 - C2 -4E4X 9.9 BRAF_HUMAN
9 PsiBlast_PDB 81.2577%-111 - C2 -3Q4C 7.4 BRAF_HUMAN
47 PsiBlast_CBE 81.1577%-115 - C2 -4MBJ 5.2 BRAF_HUMAN
25 PsiBlast_CBE 80.8077%-107 - C2 -4EHE 8.2
37 PsiBlast_CBE 80.7277%-108 - C2 -3D4Q 6.6
22 PsiBlast_CBE 80.5777%-110 - C2 -4MNF 7.7
14 PsiBlast_PDB 80.5777%-107 - C2 -4E26 5.1 BRAF_HUMAN
24 PsiBlast_CBE 80.5577%-111 - C2 -4G9C 9.9
6 PsiBlast_PDB 80.4477%-113 - C2 -3PPK 9.0 BRAF_HUMAN
13 PsiBlast_PDB 80.4277%-111 - C2 -3TV6 8.4 BRAF_HUMAN
7 PsiBlast_PDB 80.3277%-111 - C2 -3PRF 8.2 BRAF_HUMAN
48 PsiBlast_CBE 80.2977%-107 - C2 -3IDP 10.7
12 PsiBlast_PDB 80.0377%-111 - C2 -3TV4 7.7 BRAF_HUMAN
18 PsiBlast_PDB 79.8177%-112 - C2 -4PP7 9.1 BRAF_HUMAN
11 PsiBlast_PDB 79.7877%-113 - C2 -3SKC 8.6 BRAF_HUMAN
17 PsiBlast_PDB 79.7777%-112 - C2 -4EHE 8.0 BRAF_HUMAN
115 HHSearch 79.7477%-109 - C2 -4MNF 7.4 BRAF_HUMAN
3 PsiBlast_PDB 79.7477%-108 - C2 -3D4Q 7.0 BRAF_HUMAN
2 PsiBlast_PDB 79.7477%-109 - C2 -4MNF 7.4 BRAF_HUMAN
31 PsiBlast_CBE 79.7377%-107 - C2 -3PSD 8.1
66 PsiBlast_CBE 79.6476%-110 - C2 -4CQE 11.4 ?
16 PsiBlast_PDB 79.5877%-109 - C2 -4G9C 9.5 BRAF_HUMAN
4 PsiBlast_PDB 79.5577%-109 - C2 -3PSB 7.6 BRAF_HUMAN
46 PsiBlast_CBE 79.5177%-108 - C2 -4MBJ 7.1
10 PsiBlast_PDB 79.5077%-110 - C2 -3PSD 8.1 BRAF_HUMAN
36 PsiBlast_CBE 79.4577%-108 - C2 -3PPJ 7.4
62 PsiBlast_CBE 79.4076%-105 - C2 -4WO5 3.0
40 PsiBlast_CBE 79.3877%-110 - C2 -3II5 10.1
5 PsiBlast_PDB 79.3777%-108 - C2 -3PPJ 7.6 BRAF_HUMAN
63 PsiBlast_CBE 79.2876%-108 - C2 -3C4C 6.1
35 PsiBlast_CBE 79.2677%-107 - C2 -3PPK 8.4
49 PsiBlast_CBE 79.2077%-108 - C2 -3IDP 10.8 BRAF_HUMAN
28 PsiBlast_CBE 79.0977%-106 - C2 -3TV6 8.7
44 PsiBlast_CBE 79.0577%-109 - C2 -4EHG 8.7
30 PsiBlast_CBE 78.9977%-105 - C2 -3SKC 9.1
41 PsiBlast_CBE 78.9177%-109 - C2 -5C9C 9.9 ?
34 PsiBlast_CBE 78.9077%-109 - C2 -3PRF 7.3
67 PsiBlast_CBE 78.8976%-107 - C2 -4CQE 11.7 ?
55 PsiBlast_CBE 78.7780%-111 - C2 -1UWH 9.1 BRAF_HUMAN
27 PsiBlast_CBE 78.7677%-108 - C2 -4E26 4.1
60 PsiBlast_CBE 78.6376%-109 - C2 -4JVG 9.1 BRAF_HUMAN
54 PsiBlast_CBE 78.4080%-111 - C2 -1UWH 9.0
45 PsiBlast_CBE 78.3577%-111 - C2 -4EHG 7.7 BRAF_HUMAN
58 PsiBlast_CBE 78.3276%-106 - C2 -4JVG 8.6
26 PsiBlast_CBE 78.1577%-106 - C2 -4E4X 9.5
23 PsiBlast_CBE 78.1477%-107 - C2 -4PP7 9.2
32 PsiBlast_CBE 78.0877%-106 - C2 -3PSB 7.7
65 PsiBlast_CBE 77.9175%-113 - C2 -3OG7 9.6 BRAF_HUMAN
33 PsiBlast_CBE 77.8277%-108 - C2 -3PRI 7.6
61 PsiBlast_CBE 77.8076%-109 - C2 -4JVG 8.4 BRAF_HUMAN
59 PsiBlast_CBE 77.8076%-106 - C2 -4JVG 8.4 BRAF_HUMAN
29 PsiBlast_CBE 77.7477%-106 - C2 -3TV4 7.8
116 HHSearch 77.5975%-112 * C2 *3OG7 9.6 BRAF_HUMAN
20 PsiBlast_PDB 77.3977%-104 - C2 -3II5 10.4 BRAF_HUMAN
42 PsiBlast_CBE 77.2377%-103 - C2 -4G9R 10.9
56 PsiBlast_CBE 77.0680% -99 - C2 -1UWJ 8.8
8 PsiBlast_PDB 77.0377%-108 - C2 -3PRI 7.5 BRAF_HUMAN
43 PsiBlast_CBE 76.4377%-105 - C2 -4G9R 10.8 BRAF_HUMAN
57 PsiBlast_CBE 76.3880%-101 - C2 -1UWJ 9.3 BRAF_HUMAN
64 PsiBlast_CBE 75.9976% -99 - C2 -3C4C 8.2 BRAF_HUMAN
129 HHSearch 60.4736% -98 - C2 -3KUL 2.9 EPHA8_HUMAN
75 PsiBlast_CBE 59.4535%-100 - C2 -4CSV 9.9 ?
127 HHSearch 59.3033% -95 - C2 -2EVA 4.0 M3K7_HUMAN
103 PsiBlast_CBE 57.9834%-102 - C2 -4AGW 8.2 SRC_CHICK
100 PsiBlast_CBE 57.9634%-103 - C2 -4DGG 7.2 SRC_CHICK
120 HHSearch 57.1132% -85 - C2 -1T46 8.4 ?
132 HHSearch 56.9731% -85 - C2 -4CKJ 4.7
124 HHSearch 56.9031% -94 - C2 -4CLJ 6.4
102 PsiBlast_CBE 56.4034%-100 - C2 -4AGW 7.7 SRC_CHICK
91 PsiBlast_CBE 55.9434% -96 - C2 -3OEZ 9.1 SRC_CHICK
82 PsiBlast_CBE 55.8034%-100 - C2 -2BDJ 8.5 SRC_HUMAN
89 PsiBlast_CBE 55.4834%-103 - C2 -3QLF 6.8 SRC_CHICK
70 PsiBlast_CBE 55.4736%-110 - C2 -3P86 5.6 CTR1_ARATH
74 PsiBlast_CBE 54.7735% -91 - C2 -4UEU 3.4 ?
94 PsiBlast_CBE 54.4634% -95 - C2 -4U5J 4.3 SRC_CHICK
117 HHSearch 54.4237% -97 - C2 -2Y4I 4.9
78 PsiBlast_CBE 54.3333% -84 - C2 -2SRC 5.4 SRC_HUMAN
95 PsiBlast_CBE 54.1134% -99 - C2 -4U5J 4.8 SRC_CHICK
90 PsiBlast_CBE 53.6634% -93 - C2 -3OEZ 8.3 SRC_CHICK
68 PsiBlast_CBE 53.6334% -99 - C2 -2Y4I 4.9