@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : RIPK3_HUMAN: (2015-10-18 )
MSCVKLWPSGAPAPLVSIEELENQELVGKGGFGTVFRAQHRKWGYDVAVKIVNSKAISREVKAMASLDNEFVLRLEGVIEKVNWDQDPKPALVTKFMENGSLSGLLQSQCPRPWPLLCRLLKEVVLGMFYLHDQNPVLLHRDLKPSNVLLDPELHVKLADFGLSTFQGGSQSGTGSGEPGGTLGYLAPELFVNVNRKASTASDVYSFGILMWAVLAGREVELPTEPSLVYEAVCNRQNRPSLAELPQAGPETPGLEGLKELMQLCWSSEPKDRPSFQECLPKTDEVFQMVENNMNAAVSTVKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4M69)
RIPK3_MOUSE
[Raw transfer]



STI_A_3(4BKJ)
DDR1_HUMAN
[Raw transfer]



ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



STI_A_2(4CSV)
?
[Raw transfer]



0LI_A_3(4C8B)
RIPK2_HUMAN
[Raw transfer]



Q1A_A_4(4NEU)
RIPK1_HUMAN
[Raw transfer]



324_A_3(4WO5)
BRAF_HUMAN
[Raw transfer]



0LI_B_5(4C8B)
RIPK2_HUMAN
[Raw transfer]



STU_A_2(1U59)

[Raw transfer]



0T8_A_2(4FEQ)

[Raw transfer]



STU_A_3(3PPZ)
CTR1_ARATH
[Raw transfer]



GVD_B_10(3SOC)
AVR2A_HUMAN
[Raw transfer]



GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]



V4Z_A_4(4AOJ)
NTRK1_HUMAN
[Raw transfer]



TAK_A_3(3Q4T)
AVR2A_HUMAN
[Raw transfer]



ACP_A_2(4F0F)

[Raw transfer]



324_A_3(3C4C)
BRAF_HUMAN
[Raw transfer]



STU_A_3(3P86)
CTR1_ARATH
[Raw transfer]



0VF_A_2(4FYO)

[Raw transfer]



B96_B_5(4JVG)
BRAF_HUMAN
[Raw transfer]



LDN_A_5(3Q4U)
ACVR1_HUMAN
[Raw transfer]



LUN_A_2(3QUP)

[Raw transfer]



STU_B_2(1BYG)
CSK_HUMAN
[Raw transfer]



TAK_B_17(3Q4T)
AVR2A_HUMAN
[Raw transfer]



6OJ_B_8(4ASX)
AVR2A_HUMAN
[Raw transfer]



ACP_A_2(4UEU)
?
[Raw transfer]



6OJ_A_3(4ASX)
AVR2A_HUMAN
[Raw transfer]



1HX_A_3(4ITJ)
RIPK1_HUMAN
[Raw transfer]



1HX_B_9(4ITJ)
RIPK1_HUMAN
[Raw transfer]



1HW_A_3(4ITI)
RIPK1_HUMAN
[Raw transfer]



EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]
1 PsiBlast_PDB 90.5569%-108 - C2 -4M69 6.0 RIPK3_MOUSE
22 PsiBlast_CBE 69.2132%-113 - C2 -4C8B 11.1 RIPK2_HUMAN
5 PsiBlast_PDB 68.1432%-116 - C2 -4C8B 11.3 RIPK2_HUMAN
53 HHSearch 66.8632% -96 - C2 -1U59 7.7
55 HHSearch 66.5932% -94 - C2 -4BKJ 10.5 DDR1_HUMAN
44 HHSearch 66.0733% -92 - C2 -4NEU 7.3 RIPK1_HUMAN
49 HHSearch 64.4331% -92 - C2 -4FYO 5.3
4 PsiBlast_PDB 62.9133% -93 - C2 -4ITI 7.3 RIPK1_HUMAN
27 PsiBlast_CBE 62.8231%-102 - C2 -4CSV 9.2 ?
43 HHSearch 61.1334% -98 - C2 -4ITJ 7.1 RIPK1_HUMAN
21 PsiBlast_CBE 59.6133% -87 - C2 -4ITJ 6.2 RIPK1_HUMAN
30 PsiBlast_CBE 59.0431%-126 - C2 -3QUP 5.1
7 PsiBlast_PDB 58.6232% -88 - C2 -3PPZ 7.9 CTR1_ARATH
33 Fugue 58.4731% -95 - C2 -1BYG 7.1 CSK_HUMAN
10 PsiBlast_PDB 57.6531% -72 - C2 -3SOC 7.2 AVR2A_HUMAN
6 PsiBlast_PDB 57.5731%-103 - C2 -3P86 8.1 CTR1_ARATH
26 PsiBlast_CBE 57.5231% -92 - C2 -4UEU 3.7 ?
9 PsiBlast_PDB 57.3331% -74 - C2 -3Q4T 7.6 AVR2A_HUMAN
24 PsiBlast_CBE 55.2731% -72 - C2 -3SOC 7.0 AVR2A_HUMAN
11 PsiBlast_PDB 55.1931% -72 - C2 -4ASX 5.4 AVR2A_HUMAN
23 PsiBlast_CBE 54.8631% -70 - C2 -4ASX 5.4 AVR2A_HUMAN
29 PsiBlast_CBE 54.5131%-133 - C2 -4FEQ 5.2
25 PsiBlast_CBE 53.6931% -71 - C2 -3Q4T 7.0 AVR2A_HUMAN