@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : RYK_HUMAN: (2015-10-18 )
MRGAARLGRPGRSCLPGPALRAAAAPALLLARCAVAAAAGLRAAARPRPPELQSASAGPSVSLYLSEDEVRRLIGLDAELYYVRNDLISHYALSFNLLVPSETNFLHFTWHAKSKVEYKLGFQVDNVLAMDMPQVNISVQGEVPRTLSVFRVELSCTGKVDSEVMILMQLNLTVNSSKNFTVLNFKRRKMCYKKLEEVKTSALDKNTSRTIYDPVHAAPTTSTRVFYISVGVCCAVIFLVAIILAVLHLHNMKRIELDDSISASSSSQGLSQPSTQTTQYLRADTPNNATPITSYPTLRIEKNDLRSVTLLEAKGKVKDIAISRERITLKDVLQEGTFGRIFHGILIDEKDPNKEKQAFVKTVKDQASEIQVTMMLTESCKLRGLHHRNLLPITHVCIEEGEKPMVILPYMNWGNLKLFLRQCKLVEANNPQAISQQDLVHMAIQIACGMSYLARREVIHKDLAARNCVIDDTLQVKITDNALSRDLFPMDYHCLGDNENRPVRWMALESLVNNEFSSASDVWAFGVTLWELMTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCPDELFAVMACCWALDPEERPKFQQLVQCLTEFHAALGAYV

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CKJ_A_3(3TCP)
MERTK_HUMAN
[Raw transfer]




24K_B_12(4M3Q)

[Raw transfer]




0LI_B_19(4V04)

[Raw transfer]




CKJ_B_7(3TCP)

[Raw transfer]




0JJ_A_2(4DEG)

[Raw transfer]




L5G_A_2(3CD8)

[Raw transfer]




4MH_B_11(4MHA)

[Raw transfer]




0LI_B_20(4V01)

[Raw transfer]




OLP_D_11(3BPR)

[Raw transfer]




LKG_A_2(3CCN)

[Raw transfer]




3EH_A_2(4R1Y)

[Raw transfer]




66T_B_4(4WUN)

[Raw transfer]




ANP_A_3(3PLS)

[Raw transfer]




OLP_A_8(3BPR)
MERTK_HUMAN
[Raw transfer]




ZZY_A_2(2WD1)

[Raw transfer]




ANP_A_6(2P0C)
MERTK_HUMAN
[Raw transfer]




VGH_A_2(2WGJ)

[Raw transfer]




ADP_B_11(3BRB)

[Raw transfer]




1RU_A_5(4KNB)
MET_HUMAN
[Raw transfer]




38O_B_6(5AM7)

[Raw transfer]




84 PsiBlast_CBE 86.0437%-120 - C2 -4WUN 6.7
24 PsiBlast_CBE 85.8940%-114 - C2 -3TCP 5.0
23 PsiBlast_CBE 83.9940%-120 - C2 -4M3Q 5.6
94 PsiBlast_CBE 83.9237%-110 - C2 -4V04 6.5
3 PsiBlast_PDB 83.5040%-124 - C2 -3TCP 5.8 MERTK_HUMAN
76 PsiBlast_CBE 82.8837%-110 - C2 -5AM7 5.9
96 PsiBlast_CBE 82.8337%-113 - C2 -4V01 8.4
26 PsiBlast_CBE 82.2740%-116 - C2 -3BPR 6.0
2 PsiBlast_PDB 82.0040%-119 - C2 -3BPR 6.3 MERTK_HUMAN
1 PsiBlast_PDB 81.8840%-119 - C2 -2P0C 3.1 MERTK_HUMAN
25 PsiBlast_CBE 80.8540%-115 - C2 -3BRB 4.1
52 PsiBlast_CBE 78.3139%-115 - C2 -4KNB 4.8 MET_HUMAN
19 PsiBlast_PDB 78.2339%-112 - C2 -3CD8 7.1
34 PsiBlast_CBE 77.3739%-112 - C2 -4R1Y 3.6
36 PsiBlast_CBE 77.2339%-106 - C2 -2WD1 5.8
18 PsiBlast_PDB 76.3939%-116 - C2 -3CCN 7.2
10 PsiBlast_PDB 76.2539%-111 - C2 -4DEG 6.7
45 PsiBlast_CBE 75.9339%-102 - C2 -2WGJ 7.4