@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-29 )
AVSCGQVSSALSPCISYARGNGANPSAACCSGVRSLASSARSTADKQVACKCIKSAAAGLNAGKAAGIPTKCGVSVPYAISSSVDCSKIR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
28 SP3 94.3568%-113 * C5 *1FK5 6.1 NLTP_MAIZE
10 HHSearch 90.7468%-122 - C5 -1AFH - NLTP_MAIZE -
15 HHSearch 89.9948%-119 - C5 -1BWO 3.6 NLTP1_WHEAT
11 HHSearch 87.6858%-118 - C5 -1T12 - NLTP1_TOBAC -
14 HHSearch 84.3042%-130 - C5 -1SIY - NLTP1_VIGRR -
13 HHSearch 82.4249%-119 - C5 -2ALG 2.4 NLTP1_PRUPE
22 HHSearch 58.5121%-129 - C5 -1BEA - ITRF_MAIZE -
23 HHSearch 57.4424%-109 - C5 -1SM7 - ? -
26 HHSearch 54.7930%-104 - C5 -1PSY - 2SS_RICCO -
3 Fugue 53.5128% -89 - C5 -1L6H - NLTPX_ORYSJ -
25 HHSearch 53.0320%-116 - C5 -1S6D - 2SS8_HELAN -
2 Fugue 50.5924% -80 - C5 -2RKN - DIRL1_ARATH -
16 HHSearch 46.9123% -84 - C5 -2RKN - DIRL1_ARATH -
21 HHSearch 46.7316% -99 - C5 -1B1U - IAAT_ELECO -
5 Fugue 46.5425% -46 - C5 -1PSY - 2SS_RICCO -
4 Fugue 43.4516% -49 - C5 -1W2Q - CONG_ARAHY -
7 Fugue 43.3717% -43 - C5 -1S6D - 2SS8_HELAN -
17 HHSearch 43.2933% -80 - C5 -1L6H - NLTPX_ORYSJ -
24 HHSearch 41.4417% -85 - C5 -3OB4 - ? -
29 SP3 36.4314% -64 - C4 -1EHX - ? -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
32 93.05100%-119 - C- -M032 - -
33 92.94100%-124 - C- -M033 - -
38 92.65100%-119 - C- -M038 - -