@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
AVTCSDVTSAIAPCMSYATGQASSPSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSFNGISMGNAANIPGKCGVSVSFPINNSVNCNNLH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
28 SP3 86.4159%-116 - C2 -1FK5 5.8 NLTP_MAIZE
16 HHSearch 85.8239%-119 - C2 -1BWO 5.0 NLTP1_WHEAT
11 HHSearch 85.2559%-119 - C2 -1AFH - NLTP_MAIZE -
12 HHSearch 85.0644%-125 - C2 -1T12 - NLTP1_TOBAC -
14 HHSearch 82.7046%-128 - C2 -2ALG 3.1 NLTP1_PRUPE
15 HHSearch 80.2338%-119 - C2 -1SIY - NLTP1_VIGRR -
26 HHSearch 59.2527%-119 - C2 -1SM7 - ? -
23 HHSearch 53.5920%-160 - C2 -1BEA - ITRF_MAIZE -
25 HHSearch 53.5121% -95 - C2 -1PSY - 2SS_RICCO -
31 SP3 50.0115%-137 - C2 -1HSS - IAA1_WHEAT -
7 Fugue 47.9221%-108 - C2 -1S6D - 2SS8_HELAN -
4 Fugue 47.4220% -46 - C2 -1PSY - 2SS_RICCO -
9 Fugue 46.8223% -90 - C2 -4BHW - EP300_HUMAN -
2 Fugue 45.9022% -86 - C2 -2RKN - DIRL1_ARATH -
17 HHSearch 45.3924% -97 - C2 -2RKN - DIRL1_ARATH -
22 HHSearch 43.9314%-111 - C2 -1B1U - IAAT_ELECO -
29 SP3 40.1718% -92 - C2 -1L6H - NLTPX_ORYSJ -
3 Fugue 39.5125% -85 - C2 -1L6H - NLTPX_ORYSJ -
24 HHSearch 38.1118% -99 - C2 -3OB4 - ? -
18 HHSearch 37.3431% -99 - C2 -1L6H - NLTPX_ORYSJ -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
44 43.44100% - - C- -M044 - -
43 43.44100% - - C- -M043 - -
39 43.44100% - - C- -M039 - -
38 43.44100% - - C- -M038 - -