@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
AVTCGDVTSAVAPCMSYATGQTSAPSAGCCSGVRTLNAKASTSADRQAACRCLKKLAGSGISMGNAANIPGKCGVSVSFPINTKVDCNTLH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
10 SP3 93.6061%-112 - C2 -1FK5 5.7 NLTP_MAIZE
20 HHSearch 91.0060%-111 - C2 -1AFH - NLTP_MAIZE -
25 HHSearch 87.6243%-119 - C2 -1BWO 4.2 NLTP1_WHEAT
21 HHSearch 87.4747%-118 - C2 -1T12 - NLTP1_TOBAC -
23 HHSearch 86.8247%-127 - C2 -2ALG 3.1 NLTP1_PRUPE
24 HHSearch 83.0439%-116 - C2 -1SIY - NLTP1_VIGRR -
32 HHSearch 64.2921%-142 - C2 -1BEA - ITRF_MAIZE -
33 HHSearch 60.0724%-113 - C2 -1SM7 - ? -
34 HHSearch 57.4822% -95 - C2 -1PSY - 2SS_RICCO -
2 Fugue 55.0823% -92 - C2 -2RKN - DIRL1_ARATH -
31 HHSearch 49.8514%-100 - C2 -1B1U - IAAT_ELECO -
26 HHSearch 48.7721% -88 - C2 -2RKN - DIRL1_ARATH -
8 Fugue 45.7220% -43 - C2 -1PSY - 2SS_RICCO -
11 SP3 45.5518% -86 - C2 -1L6H - NLTPX_ORYSJ -
14 SP3 44.7416% -48 - C2 -1ALL - PHAA_ARTPT -
35 HHSearch 43.5519% -94 - C2 -3OB4 - ? -
3 Fugue 42.4227% -82 - C2 -1L6H - NLTPX_ORYSJ -
27 HHSearch 39.6729% -90 - C2 -1L6H - NLTPX_ORYSJ -
28 HHSearch 38.9132% -55 - C2 -1N89 - NLT2G_WHEAT -
16 SP3 38.6016% -79 - C2 -1QPO - NADC_MYCTU -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
44 43.88100% - - C- -M044 - -
43 43.88100% - - C- -M043 - -
39 43.88100% - - C- -M039 - -
37 43.88100% - - C- -M037 - -