@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
AVTCGDVTSAVAPCMSYARGQASAPSGACCSGVRTLNAKASTPADRKAACNCLKNLAGSGISMGNAANIPGKCGVSVSFPINTKTNCNNLH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
10 SP3 94.7262%-105 - C3 -1FK5 5.9 NLTP_MAIZE
20 HHSearch 90.1362%-100 - C3 -1AFH - NLTP_MAIZE -
21 HHSearch 87.0048%-113 - C3 -1T12 - NLTP1_TOBAC -
23 HHSearch 86.6050%-116 - C3 -2ALG 3.1 NLTP1_PRUPE
25 HHSearch 85.0343%-104 - C3 -1BWO 4.2 NLTP1_WHEAT
24 HHSearch 82.5542%-107 - C3 -1SIY - NLTP1_VIGRR -
33 HHSearch 63.7626%-118 - C3 -1SM7 - ? -
34 HHSearch 60.6025% -99 - C3 -1PSY - 2SS_RICCO -
32 HHSearch 57.5819%-141 - C3 -1BEA - ITRF_MAIZE -
2 Fugue 52.8623% -86 - C3 -2RKN - DIRL1_ARATH -
26 HHSearch 47.4521% -91 - C3 -2RKN - DIRL1_ARATH -
31 HHSearch 46.9813%-100 - C3 -1B1U - IAAT_ELECO -
14 SP3 45.9315% -48 - C3 -1ALL - PHAA_ARTPT -
11 SP3 45.7319% -85 - C3 -1L6H - NLTPX_ORYSJ -
5 Fugue 42.7020% -38 - C3 -1PSY - 2SS_RICCO -
35 HHSearch 42.5219% -93 - C3 -3OB4 - ? -
8 Fugue 41.9216% -92 - C3 -1HSS - IAA1_WHEAT -
4 Fugue 40.5612% -37 - C3 -3UUN - DMD_HUMAN -
16 SP3 40.4416% -74 - C3 -1QPO - NADC_MYCTU -
15 SP3 39.4114% -28 - C3 -1DLW - TRHBN_PARCA -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
41 40.32100% - - C- -M041 - -
40 40.32100% - - C- -M040 - -
37 40.32100% - - C- -M037 - -