@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
AVTCGDVTSAVAPCMSYATGKASAPSGACCSGVRTLNAKASTPADRKAACNCLKNLAGSGISMGNAANIPGKCGVSVSFPISTKTNCNNLH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
11 SP3 94.7661%-104 - C3 -1FK5 5.9 NLTP_MAIZE
21 HHSearch 89.5860%-101 - C3 -1AFH - NLTP_MAIZE -
22 HHSearch 86.0348%-114 - C3 -1T12 - NLTP1_TOBAC -
24 HHSearch 85.9550%-111 - C3 -2ALG 3.1 NLTP1_PRUPE
26 HHSearch 84.8744%-104 - C3 -1BWO 4.2 NLTP1_WHEAT
25 HHSearch 81.0443%-107 - C3 -1SIY - NLTP1_VIGRR -
33 HHSearch 64.8821%-139 - C3 -1BEA - ITRF_MAIZE -
34 HHSearch 62.0623%-115 - C3 -1SM7 - ? -
36 HHSearch 53.5523%-101 - C3 -1PSY - 2SS_RICCO -
2 Fugue 49.3923% -85 - C3 -2RKN - DIRL1_ARATH -
27 HHSearch 47.5721% -88 - C3 -2RKN - DIRL1_ARATH -
32 HHSearch 46.3013% -98 - C3 -1B1U - IAAT_ELECO -
12 SP3 45.4219% -85 - C3 -1L6H - NLTPX_ORYSJ -
17 SP3 44.6315% -48 - C3 -1ALL - PHAA_ARTPT -
18 SP3 43.4316% -74 - C3 -1QPO - NADC_MYCTU -
35 HHSearch 43.0619% -93 - C3 -3OB4 - ? -
5 Fugue 39.4319% -39 - C3 -1PSY - 2SS_RICCO -
9 Fugue 38.3210% -71 - C3 -2POL - DPO3B_ECOLI -
28 HHSearch 36.4329% -81 - C3 -1L6H - NLTPX_ORYSJ -
4 Fugue 35.9512% -34 - C3 -3UUN - DMD_HUMAN -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
44 40.32100% - - C- -M044 - -
42 40.32100% - - C- -M042 - -
40 40.32100% - - C- -M040 - -
38 40.32100% - - C- -M038 - -