@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
ALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSPDRKIACRCLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTNCNNVN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
15 HHSearch 93.0751%-122 - C4 -1T12 - NLTP1_TOBAC -
16 HHSearch 88.7149%-127 - C4 -2ALG 3.9 NLTP1_PRUPE
10 SP3 88.0950%-122 - C4 -1FK5 5.7 NLTP_MAIZE
14 HHSearch 85.7551%-118 - C4 -1AFH - NLTP_MAIZE -
19 HHSearch 81.1543%-123 - C4 -1BWO 4.8 NLTP1_WHEAT
18 HHSearch 81.1040%-117 - C4 -1SIY - NLTP1_VIGRR -
28 HHSearch 61.8523%-132 - C4 -1SM7 - ? -
26 HHSearch 59.2420%-159 - C4 -1BEA - ITRF_MAIZE -
29 HHSearch 54.8818% -96 - C4 -1PSY - 2SS_RICCO -
20 HHSearch 50.5025% -97 - C4 -2RKN - DIRL1_ARATH -
2 Fugue 47.7124% -63 - C4 -2RKN - DIRL1_ARATH -
30 HHSearch 45.4319% -90 - C4 -3OB4 - ? -
27 HHSearch 44.7118%-102 - C4 -1S6D - 2SS8_HELAN -
25 HHSearch 44.4419%-106 - C4 -1B1U - IAAT_ELECO -
3 Fugue 43.6019% -35 - C4 -1PSY - 2SS_RICCO -
8 Fugue 43.3420% -54 - C4 -1L6H - NLTPX_ORYSJ -
21 HHSearch 41.0622% -78 - C4 -1L6H - NLTPX_ORYSJ -
4 Fugue 39.428% -65 - C4 -3D7J - ? -
22 HHSearch 38.6727% -31 - C4 -1N89 - NLT2G_WHEAT -
6 Fugue 34.0412% -36 - C4 -1W2Q - CONG_ARAHY -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
34 94.80100%-142 - C- -M034 - -
33 93.57100%-136 - C- -M033 - -
37 91.57100%-141 - C- -M037 - -