@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
AVANCGQVVSYLAPCISYAMGRVSAPGGGCCSGVRGLNAAAATPADRKTTCTCLKQQASGIGGIKPNLVAGIPGKCGVNIPYAISQGTDCSKVR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




21 HHSearch 94.5558%-115 - C2 -1AFH - NLTP_MAIZE -
11 SP3 93.5357%-114 - C2 -1FK5 5.7 NLTP_MAIZE
22 HHSearch 92.1953%-119 - C2 -1T12 - NLTP1_TOBAC -
24 HHSearch 88.8749%-114 - C2 -2ALG 2.6 NLTP1_PRUPE
25 HHSearch 88.5543%-120 - C2 -1SIY - NLTP1_VIGRR -
26 HHSearch 87.4646%-113 - C2 -1BWO 4.7 NLTP1_WHEAT
18 SP3 59.9522%-106 - C2 -1QPO - NADC_MYCTU -
19 SP3 58.8622%-106 - C2 -1QPO - NADC_MYCTU -
34 HHSearch 52.9519%-141 - C2 -1BEA - ITRF_MAIZE -
35 HHSearch 50.2823%-132 - C2 -1SM7 - ? -
20 SP3 49.6814%-116 - C2 -1HSS - IAA1_WHEAT -
3 Fugue 48.8025% -97 - C2 -1L6H - NLTPX_ORYSJ -
4 Fugue 48.1821% -86 - C2 -1W2Q - CONG_ARAHY -
31 HHSearch 46.0518%-104 - C2 -1S6D - 2SS8_HELAN -
36 HHSearch 45.6320% -59 - C2 -3OB4 - ? -
9 Fugue 45.1415% -79 - C2 -3PM6 - ALF_COCIM -
2 Fugue 45.0525% -85 - C2 -2RKN - DIRL1_ARATH -
6 Fugue 44.9819% -57 - C2 -1PSY - 2SS_RICCO -
27 HHSearch 44.5422% -95 - C2 -2RKN - DIRL1_ARATH -
10 Fugue 44.0818% -54 - C2 -4HLB - ? -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




39 44.25100% -1 - C- -M039 - -
46 42.44100% 3 - C- -M046 - -
44 41.00100% 5 - C- -M044 - -