@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
VVVARAALSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAAGGPYISRAAGLPGRCGVSVPFKISPNVNCNAVN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




24 HHSearch 93.0645%-150 - C3 -1SIY - NLTP1_VIGRR -
20 HHSearch 92.4654%-150 - C3 -2ALG 3.9 NLTP1_PRUPE
22 HHSearch 91.6751%-133 - C3 -1AFH - NLTP_MAIZE -
11 SP3 90.1447%-146 - C3 -1FK5 5.2 NLTP_MAIZE
21 HHSearch 84.8247%-133 - C3 -1T12 - NLTP1_TOBAC -
25 HHSearch 82.9738%-150 - C3 -1BWO - NLTP1_WHEAT -
34 HHSearch 62.6427%-137 * C3 *1BEA - ITRF_MAIZE -
38 HHSearch 60.4617%-126 - C3 -1W2Q - CONG_ARAHY -
36 HHSearch 57.7023%-148 - C3 -1SM7 - ? -
33 HHSearch 54.5720%-130 - C3 -1B1U - IAAT_ELECO -
14 SP3 52.9315%-136 - C3 -1HSS - IAA1_WHEAT -
35 HHSearch 51.0422%-105 - C3 -3OB4 - ? -
37 HHSearch 50.6822%-103 - C3 -1PSY - 2SS_RICCO -
2 Fugue 50.6027%-110 - C3 -2RKN - DIRL1_ARATH -
31 HHSearch 50.4223%-130 - C3 -2LVF - ? -
30 HHSearch 50.3318%-160 - C3 -1S6D - 2SS8_HELAN -
9 Fugue 48.9812% -90 - C3 -1W2Q - CONG_ARAHY -
26 HHSearch 46.9122%-110 - C3 -2RKN - DIRL1_ARATH -
18 SP3 46.5216%-112 - C3 -1HO1 - PDXJ_ECOLI -
4 Fugue 46.2817% -66 - C3 -1PSY - 2SS_RICCO -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




44 59.19100% -82 - C- -M044 - -
41 59.17100% -86 - C- -M041 - -
42 56.29100% -74 - C- -M042 - -
40 55.01100% -73 - C- -M040 - -