@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-04-30 )
AITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




11 SP3 91.8964%-140 - C2 -1FK5 6.0 NLTP_MAIZE
21 HHSearch 88.4764%-141 - C2 -1AFH - NLTP_MAIZE -
22 HHSearch 87.8254%-151 - C2 -2ALG 3.7 NLTP1_PRUPE
23 HHSearch 86.9460%-142 - C2 -1T12 - NLTP1_TOBAC -
26 HHSearch 84.4353%-152 - C2 -1BWO 6.3 NLTP1_WHEAT
25 HHSearch 82.7946%-146 - C2 -1SIY - NLTP1_VIGRR -
34 HHSearch 59.5025%-175 - C2 -1BEA - ITRF_MAIZE -
14 SP3 52.4615%-161 - C2 -1HSS - IAA1_WHEAT -
39 HHSearch 51.3217%-173 - C2 -1HSS - IAA1_WHEAT -
37 HHSearch 50.6427%-109 - C2 -1PSY - 2SS_RICCO -
35 HHSearch 49.8221%-130 - C2 -1SM7 - ? -
27 HHSearch 46.9020%-118 - C2 -2RKN - DIRL1_ARATH -
33 HHSearch 45.8918%-141 - C2 -1S6D - 2SS8_HELAN -
31 HHSearch 43.4217%-148 - C2 -1B1U - IAAT_ELECO -
8 Fugue 41.7322% -71 - C2 -1PSY - 2SS_RICCO -
2 Fugue 40.4920% -99 - C2 -2RKN - DIRL1_ARATH -
36 HHSearch 38.8916%-103 - C2 -3OB4 - ? -
15 SP3 36.0914% -79 - C2 -1B0A - FOLD_ECOLI -
20 SP3 34.9915%-106 - C2 -1QPO - NADC_MYCTU -
29 HHSearch 32.1423% -79 - C2 -1N89 - NLT2G_WHEAT -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




44 97.51100%-162 - C- -M044 - -
47 95.70100%-156 - C- -M047 - -
41 94.80100%-156 - C- -M041 - -
46 94.53100%-154 - C- -M046 - -