@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 093_tII_WHEAT: (2014-05-01 )
ACEVGQLTVCMPAITTGAKPSGACCGNLRAQQACFCQYAKDPSLARYITSPHARETLVSCGLAVPHC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
1 HHSearch 94.9275%-127 - C1 -1N89 6.4 NLT2G_WHEAT
2 HHSearch 90.6760%-138 - C1 -1L6H - NLTPX_ORYSJ -
27 SP3 90.0059%-137 - C1 -1L6H - NLTPX_ORYSJ -
17 Fugue 90.0059%-137 - C1 -1L6H - NLTPX_ORYSJ -
18 Fugue 74.5634%-129 - C1 -2RKN - DIRL1_ARATH -
3 HHSearch 69.6633%-121 - C1 -2RKN - DIRL1_ARATH -
9 HHSearch 66.1732%-109 - C1 -1T12 - NLTP1_TOBAC -
19 Fugue 63.0926% -79 - C1 -1BWO - NLTP1_WHEAT -
31 SP3 62.1720%-121 - C1 -1HYP - ? -
6 HHSearch 62.1533% -92 - C1 -2ALG - NLTP1_PRUPE -
28 SP3 61.6920%-115 - C1 -1FK5 - NLTP_MAIZE -
10 HHSearch 60.1823%-127 - C1 -1HYP - HPSE_SOYBN -
8 HHSearch 59.9526%-104 - C1 -1AFH - NLTP_MAIZE -
35 SP3 59.5716%-106 - C1 -1ELK - TOM1_HUMAN -
4 HHSearch 55.6626% -67 - C1 -1BWO - NLTP1_WHEAT -
25 Fugue 55.4922%-113 - C1 -2QSB - Y600_THEAC -
21 Fugue 50.6611% -86 * C1 *3FBI - MED31_YEAST -
5 HHSearch 49.2123% -82 - C1 -1SIY - NLTP1_VIGRR -
33 SP3 45.9611% -90 - C1 -1IHU - ARSA1_ECOLX -
36 SP3 40.9714%-101 - C1 -1XFL - TRXH1_ARATH -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
41 98.81100%-145 - C- -M041 - -
42 90.16100%-131 - C- -M042 - -