@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 094_tII_WHEAT: (2014-05-01 )
ACEVGQLTVCMPAITTGAKPSDACCGNLRAQQACFCQYAKDPSLARYITSPHARETLVSCGLAVPHC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]




1 HHSearch 95.4673%-125 - C3 -1N89 6.4 NLT2G_WHEAT
2 HHSearch 90.3760%-138 - C3 -1L6H - NLTPX_ORYSJ -
25 SP3 90.0459%-138 - C3 -1L6H - NLTPX_ORYSJ -
15 Fugue 90.0459%-138 - C3 -1L6H - NLTPX_ORYSJ -
16 Fugue 74.0034%-129 - C3 -2RKN - DIRL1_ARATH -
3 HHSearch 72.3033%-120 - C3 -2RKN - DIRL1_ARATH -
29 SP3 64.2222%-120 - C3 -1HYP - ? -
6 HHSearch 63.8233% -92 - C3 -2ALG - NLTP1_PRUPE -
9 HHSearch 62.7730%-105 - C3 -1T12 - NLTP1_TOBAC -
26 SP3 62.6420%-115 - C3 -1FK5 - NLTP_MAIZE -
8 HHSearch 61.3626%-104 - C3 -1AFH - NLTP_MAIZE -
10 HHSearch 60.4125%-124 - C3 -1HYP - HPSE_SOYBN -
4 HHSearch 58.5025% -67 - C3 -1BWO - NLTP1_WHEAT -
24 Fugue 56.8722%-107 - C3 -2QSB - Y600_THEAC -
5 HHSearch 49.9623% -81 - C3 -1SIY - NLTP1_VIGRR -
34 SP3 49.7116% -92 - C3 -1F9M - TRXF_SPIOL -
20 Fugue 49.3911% -86 - C3 -3FBI - MED31_YEAST -
18 Fugue 45.2225% -88 * C2 *1CWV - -
27 SP3 41.4311%-100 - C3 -1U78 - TC3A_CAEEL -
32 SP3 41.0214% -96 - C3 -1XFL - TRXH1_ARATH -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]




42 94.17100%-139 - C- -M042 - -
41 93.20100%-141 - C- -M041 - -
40 90.71100%-132 - C- -M040 - -