@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 096_tII_WHEAT: (2014-05-01 )
ACEVGQLTVCMPAITTGAKPSGACCANLRAQQACFCQYAKDPSLGAYIRSPHASETLVSCGLAVPHC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
1 HHSearch 95.6375%-129 - C3 -1N89 5.9 NLT2G_WHEAT
2 HHSearch 86.9458%-139 - C3 -1L6H - NLTPX_ORYSJ -
26 SP3 86.2258%-138 - C3 -1L6H - NLTPX_ORYSJ -
16 Fugue 86.2258%-138 - C3 -1L6H - NLTPX_ORYSJ -
17 Fugue 75.3937%-129 - C3 -2RKN - DIRL1_ARATH -
3 HHSearch 69.7336%-122 - C3 -2RKN - DIRL1_ARATH -
11 HHSearch 61.5427%-135 - C3 -1HYP - HPSE_SOYBN -
9 HHSearch 58.8633%-114 - C3 -1T12 - NLTP1_TOBAC -
8 HHSearch 58.6924%-103 - C3 -1AFH - NLTP_MAIZE -
7 HHSearch 57.6131% -94 - C3 -2ALG - NLTP1_PRUPE -
27 SP3 57.4619%-103 - C3 -1FK5 - NLTP_MAIZE -
32 SP3 53.0314%-109 - C3 -1ELK - TOM1_HUMAN -
28 SP3 52.3516%-112 - C3 -1KNG - CYCY_BRADU -
4 HHSearch 51.6525% -69 - C3 -1BWO - NLTP1_WHEAT -
22 Fugue 49.9013% -94 - C3 -1S6D - 2SS8_HELAN -
5 HHSearch 46.4923% -85 - C3 -1SIY - NLTP1_VIGRR -
23 Fugue 46.4311% -90 - C3 -3FBI - MED31_YEAST -
24 Fugue 44.6418% -91 - C3 -3L8I - PDC10_HUMAN -
30 SP3 44.2114% -96 - C3 -1F9M - TRXF_SPIOL -
25 Fugue 42.7815%-114 - C3 -1VD2 - KPCI_HUMAN -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
43 94.81100%-139 - C- -M043 - -
42 94.16100%-130 - C- -M042 - -