@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 100_tII_WHEAT: (2014-05-01 )
ATCNALQLTPCAGAIVGNAAPTASCCSKMKEQQPCMCQYARDPNLKQYVDSPNGKKVMAACKVPVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]




2 HHSearch 91.3653%-105 - C4 -1L6H - NLTPX_ORYSJ -
25 SP3 90.6152%-105 - C4 -1L6H - NLTPX_ORYSJ -
16 Fugue 90.6152%-105 - C4 -1L6H - NLTPX_ORYSJ -
1 HHSearch 87.7343% -99 - C4 -1N89 5.8 NLT2G_WHEAT
17 Fugue 78.8423% -80 - C4 -2RKN - DIRL1_ARATH -
3 HHSearch 74.1623% -84 - C4 -2RKN - DIRL1_ARATH -
26 SP3 64.7525% -61 - C4 -1FK5 - NLTP_MAIZE -
4 HHSearch 62.6123% -50 - C4 -1BWO - NLTP1_WHEAT -
34 SP3 61.2720%-115 * C4 *1S6D - 2SS8_HELAN -
8 HHSearch 59.5224% -84 - C4 -1AFH - NLTP_MAIZE -
5 HHSearch 57.5127% -80 - C4 -2ALG - NLTP1_PRUPE -
10 HHSearch 56.8220% -93 - C4 -1HYP - HPSE_SOYBN -
20 Fugue 55.7611%-102 - C4 -3ZR8 - ? -
6 HHSearch 55.5623% -53 - C4 -1SIY - NLTP1_VIGRR -
9 HHSearch 53.8623% -56 - C4 -1T12 - NLTP1_TOBAC -
28 SP3 48.0013% -57 - C4 -1KNG - CYCY_BRADU -
19 Fugue 47.9319% -80 - C4 -2LSE - ? -
29 SP3 46.3614% -58 - C4 -1PS6 - PDXA_ECOLI -
27 SP3 45.4110% -67 - C4 -1U78 - TC3A_CAEEL -
33 SP3 42.4110% -68 - C4 -1TC3 - TC3A_CAEEL -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]




39 97.95100%-104 - C- -M039 - -
40 93.86100%-110 - C- -M040 - -
41 92.59100%-115 - C- -M041 - -