@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 104_tII_WHEAT: (2014-05-01 )
ATCNALQLTPCAGAIIGNAAPTASCCSKMKEQQPCMCQYARDPNLKQYVDSPNGKKVMAACKVPVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
2 HHSearch 90.9953%-106 - C1 -1L6H - NLTPX_ORYSJ -
26 SP3 90.6052%-106 - C1 -1L6H - NLTPX_ORYSJ -
16 Fugue 90.6052%-106 - C1 -1L6H - NLTPX_ORYSJ -
1 HHSearch 87.2343%-100 - C1 -1N89 5.8 NLT2G_WHEAT
17 Fugue 77.2823% -79 - C1 -2RKN - DIRL1_ARATH -
3 HHSearch 72.6023% -83 - C1 -2RKN - DIRL1_ARATH -
27 SP3 65.2625% -60 - C1 -1FK5 - NLTP_MAIZE -
35 SP3 62.8920%-118 - C1 -1S6D - 2SS8_HELAN -
8 HHSearch 60.3924% -86 - C1 -1AFH - NLTP_MAIZE -
10 HHSearch 57.3820% -94 - C1 -1HYP - HPSE_SOYBN -
20 Fugue 57.2111%-103 - C1 -3ZR8 - ? -
6 HHSearch 57.0827% -80 - C1 -2ALG - NLTP1_PRUPE -
4 HHSearch 56.9723% -50 - C1 -1BWO - NLTP1_WHEAT -
5 HHSearch 55.4023% -56 - C1 -1SIY - NLTP1_VIGRR -
9 HHSearch 53.7123% -58 - C1 -1T12 - NLTP1_TOBAC -
19 Fugue 49.2819% -81 - C1 -2LSE - ? -
29 SP3 47.3313% -58 - C1 -1KNG - CYCY_BRADU -
28 SP3 45.6110% -70 - C1 -1U78 - TC3A_CAEEL -
30 SP3 44.6313% -60 - C1 -1PS6 - PDXA_ECOLI -
34 SP3 42.4110% -72 * C1 *1TC3 - TC3A_CAEEL -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
40 98.00100%-113 - C- -M040 - -
41 95.85100%-107 - C- -M041 - -