@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 105_tII_WHEAT: (2014-05-01 )
ATCDALQLSPCAGAIVGNAAPTAVCCSRMKAQRPCMCQYARDPNLKQYVNSPNGKKVLAACKVPVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
26 SP3 89.2951%-108 - C2 -1L6H - NLTPX_ORYSJ -
16 Fugue 89.2951%-108 - C2 -1L6H - NLTPX_ORYSJ -
2 HHSearch 89.2951%-107 - C2 -1L6H - NLTPX_ORYSJ -
1 HHSearch 86.7245%-102 - C2 -1N89 5.6 NLT2G_WHEAT
27 SP3 68.5826% -83 - C2 -1FK5 - NLTP_MAIZE -
17 Fugue 67.3623% -99 - C2 -2RKN - DIRL1_ARATH -
3 HHSearch 64.4022% -95 - C2 -2RKN - DIRL1_ARATH -
20 Fugue 63.5420% -76 - C2 -1MOL - MONB_DIOCU -
8 HHSearch 62.7726% -86 - C2 -1AFH - NLTP_MAIZE -
9 HHSearch 62.3626% -65 - C2 -1T12 - NLTP1_TOBAC -
5 HHSearch 61.8529% -90 - C2 -2ALG - NLTP1_PRUPE -
35 SP3 61.4219%-126 - C2 -1S6D - 2SS8_HELAN -
10 HHSearch 58.8225%-106 - C2 -1HYP - HPSE_SOYBN -
4 HHSearch 57.9425% -64 - C2 -1BWO - NLTP1_WHEAT -
7 HHSearch 55.1323% -73 - C2 -1SIY - NLTP1_VIGRR -
24 Fugue 52.7130% -54 - C2 -2ZB6 - HEMA_MEASE -
23 Fugue 52.459%-108 - C2 -3ZR8 - ? -
29 SP3 50.9414% -81 - C2 -1KNG - CYCY_BRADU -
28 SP3 49.2210% -85 - C2 -1U78 - TC3A_CAEEL -
31 SP3 47.5913% -79 - C2 -1F9M - TRXF_SPIOL -


User Run . : Multi Template Modeling Result:

(1 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
40 98.01100%-121 - C- -M040 - -