@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 112_tII_WHEAT: (2014-05-01 )
AGCDASALRPCVGAIMLGGAVTPGCCARLRAQRACLCQYARDPSYRGYVNSPRAQSVVAACGLPGPKC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
1 HHSearch 93.5146%-133 - C1 -1N89 4.9 NLT2G_WHEAT
26 SP3 83.5951%-115 - C1 -1L6H - NLTPX_ORYSJ -
16 Fugue 83.5951%-115 - C1 -1L6H - NLTPX_ORYSJ -
2 HHSearch 83.5951%-115 - C1 -1L6H - NLTPX_ORYSJ -
17 Fugue 78.1030%-127 - C1 -2RKN - DIRL1_ARATH -
7 HHSearch 77.9537%-121 - C1 -2ALG - NLTP1_PRUPE -
27 SP3 76.9830%-131 - C1 -1FK5 - NLTP_MAIZE -
3 HHSearch 74.1128%-143 - C1 -2RKN - DIRL1_ARATH -
4 HHSearch 69.2428%-125 - C1 -1BWO - NLTP1_WHEAT -
35 SP3 68.9326%-152 - C1 -1S6D - 2SS8_HELAN -
5 HHSearch 68.8330%-120 - C1 -1SIY - NLTP1_VIGRR -
8 HHSearch 67.2631%-126 - C1 -1AFH - NLTP_MAIZE -
11 HHSearch 66.9330%-131 - C1 -1HYP - HPSE_SOYBN -
9 HHSearch 66.3230%-125 - C1 -1T12 - NLTP1_TOBAC -
28 SP3 56.4214%-137 - C1 -1U78 - TC3A_CAEEL -
34 SP3 54.7911%-141 * C1 *1TC3 - TC3A_CAEEL -
21 Fugue 48.6423% -73 - C1 -4EPQ - ? -
30 SP3 47.6914%-106 - C1 -1PS6 - PDXA_ECOLI -
22 Fugue 45.6714%-120 - C1 -2CKX - ? -
20 Fugue 43.2817% -79 - C1 -1S6D - 2SS8_HELAN -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
43 97.20100%-143 - C- -M043 - -
42 96.91100%-153 - C- -M042 - -
41 94.36100%-140 - C- -M041 - -