@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 116_tII_ORYSA: (2014-05-01 )
GVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTCH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
12 HHSearch 91.24100%-138 - C4 -1L6H - NLTPX_ORYSJ -
1 Fugue 91.24100%-138 - C4 -1L6H - NLTPX_ORYSJ -
25 SP3 89.1490%-138 - C4 -1L6H - NLTPX_ORYSJ -
11 HHSearch 81.0160%-122 - C4 -1N89 6.2 NLT2G_WHEAT
2 Fugue 70.6127%-105 - C4 -2RKN - DIRL1_ARATH -
13 HHSearch 68.6128%-105 - C4 -2RKN - DIRL1_ARATH -
30 SP3 63.2923%-133 - C4 -1S6D - 2SS8_HELAN -
15 HHSearch 60.9232% -85 - C4 -2ALG - NLTP1_PRUPE -
19 HHSearch 59.5929% -96 - C4 -1T12 - NLTP1_TOBAC -
18 HHSearch 59.3730% -72 - C4 -1AFH - NLTP_MAIZE -
26 SP3 58.8625% -85 * C4 *1FK5 - NLTP_MAIZE -
20 HHSearch 55.6423%-114 - C4 -1HYP - HPSE_SOYBN -
4 Fugue 55.2718% -98 - C4 -1S6D - 2SS8_HELAN -
14 HHSearch 54.9728% -67 - C4 -1BWO - NLTP1_WHEAT -
24 HHSearch 54.8620% -81 - C4 -3OB4 - ? -
32 SP3 53.2117% -82 - C4 -1KNG - CYCY_BRADU -
17 HHSearch 51.0326% -80 - C4 -1SIY - NLTP1_VIGRR -
28 SP3 49.8221% -71 - C4 -1XFL - TRXH1_ARATH -
31 SP3 44.9411% -89 - C4 -1U78 - TC3A_CAEEL -
27 SP3 38.1813% -94 - C4 -1PS6 - PDXA_ECOLI -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
39 60.73100% -51 - C- -M039 - -
38 59.17100% -40 - C- -M038 - -