@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 117_tII_ORYSA: (2014-05-01 )
ACDALQLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]




1 HHSearch 92.1848%-102 - C3 -1N89 4.7 NLT2G_WHEAT
2 HHSearch 91.0949%-118 - C3 -1L6H - NLTPX_ORYSJ -
27 SP3 90.1649%-118 - C3 -1L6H - NLTPX_ORYSJ -
17 Fugue 90.1649%-118 - C3 -1L6H - NLTPX_ORYSJ -
18 Fugue 71.8226%-101 - C3 -2RKN - DIRL1_ARATH -
3 HHSearch 68.5627% -98 - C3 -2RKN - DIRL1_ARATH -
28 SP3 67.6731% -75 - C3 -1FK5 - NLTP_MAIZE -
11 HHSearch 65.3827%-110 - C3 -1HYP - HPSE_SOYBN -
4 HHSearch 64.3428% -55 - C3 -1BWO - NLTP1_WHEAT -
8 HHSearch 64.0031% -89 - C3 -1AFH - NLTP_MAIZE -
5 HHSearch 63.1823% -67 - C3 -1SIY - NLTP1_VIGRR -
9 HHSearch 60.1725% -72 - C3 -1T12 - NLTP1_TOBAC -
6 HHSearch 56.7626% -67 - C3 -2ALG - NLTP1_PRUPE -
26 Fugue 53.4029% -87 - C5 -4BFA - DUSC_ECOLI -
30 SP3 50.8019% -66 - C3 -1KNG - CYCY_BRADU -
31 SP3 47.2811% -89 - C3 -1F9M - TRXF_SPIOL -
35 SP3 45.3013% -73 - C3 -1PS6 - PDXA_ECOLI -
34 SP3 43.9416% -61 - C3 -1XFL - TRXH1_ARATH -
36 SP3 43.2110% -79 - C3 -1TC3 - TC3A_CAEEL -
29 SP3 42.5810% -76 * C3 *1U78 - TC3A_CAEEL -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]




42 96.67100%-115 - C- -M042 - -
41 91.96100%-111 - C- -M041 - -