@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-03 )
AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]
11 SP3 94.4846%-127 - C2 -1FK5 4.8 NLTP_MAIZE
17 HHSearch 93.4747%-123 - C2 -1T12 - NLTP1_TOBAC -
19 HHSearch 93.2547%-126 - C2 -1AFH - NLTP_MAIZE -
21 HHSearch 90.6437%-117 - C2 -1SIY - NLTP1_VIGRR -
18 HHSearch 89.4238%-126 - C2 -2ALG 2.4 NLTP1_PRUPE
22 HHSearch 89.2336%-126 - C2 -1BWO - NLTP1_WHEAT -
8 Fugue 63.8624% -78 - C2 -1PSY - 2SS_RICCO -
32 HHSearch 63.5124%-101 - C2 -1PSY - 2SS_RICCO -
26 HHSearch 62.6822%-124 - C2 -1BEA - ITRF_MAIZE -
30 HHSearch 62.1422% -93 - C2 -1SM7 - ? -
34 HHSearch 57.9916%-107 - C2 -1HSS - IAA1_WHEAT -
2 Fugue 57.4122% -97 - C2 -2RKN - DIRL1_ARATH -
23 HHSearch 54.0421%-111 - C2 -2RKN - DIRL1_ARATH -
35 HHSearch 53.3915% -80 - C2 -1W2Q - CONG_ARAHY -
29 HHSearch 52.9315% -87 - C2 -1B1U - IAAT_ELECO -
33 HHSearch 52.8417%-109 - C2 -1S6D - 2SS8_HELAN -
36 HHSearch 48.5516% -98 - C2 -2LVF - ? -
25 HHSearch 45.8020% -76 - C2 -1N89 - NLT2G_WHEAT -
7 Fugue 45.5412% -68 - C2 -1W2Q - CONG_ARAHY -
4 Fugue 45.1717% -70 - C2 -1S6D - 2SS8_HELAN -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]
40 98.33100%-142 - C- -M040 - -
42 97.76100%-137 - C- -M042 - -
44 97.73100%-141 - C- -M044 - -