@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-03 )
ALSCGTVSGYVAPCIGYLAQGAPALPRACCSGVTSLNNLARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKTTNCNSVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




24 HHSearch 94.6155%-135 - C2 -2ALG 3.8 NLTP1_PRUPE
22 HHSearch 92.0953%-129 - C2 -1T12 - NLTP1_TOBAC -
11 SP3 91.7351%-137 - C2 -1FK5 4.3 NLTP_MAIZE
25 HHSearch 90.9851%-140 - C2 -1SIY - NLTP1_VIGRR -
21 HHSearch 89.0552%-131 - C2 -1AFH - NLTP_MAIZE -
26 HHSearch 85.6844%-141 - C2 -1BWO 3.6 NLTP1_WHEAT
30 HHSearch 59.9322%-168 - C2 -1BEA - ITRF_MAIZE -
37 HHSearch 57.3423%-153 - C2 -1SM7 - ? -
3 Fugue 56.7521% -96 - C2 -1PSY - 2SS_RICCO -
20 SP3 56.3316%-143 - C2 -1HSS - IAA1_WHEAT -
27 HHSearch 52.1021%-113 - C2 -2RKN - DIRL1_ARATH -
5 Fugue 50.1513% -69 - C2 -1W2Q - CONG_ARAHY -
7 Fugue 49.9930%-108 - C2 -1L6H - NLTPX_ORYSJ -
34 HHSearch 49.4724%-102 - C2 -1PSY - 2SS_RICCO -
8 Fugue 49.2820%-105 - C2 -1HSS - IAA1_WHEAT -
32 HHSearch 48.7014%-153 - C2 -1B1U - IAAT_ELECO -
35 HHSearch 48.5419%-138 - C2 -1S6D - 2SS8_HELAN -
14 SP3 48.2922%-114 - C2 -1L6H - NLTPX_ORYSJ -
2 Fugue 45.6221% -92 - C2 -2RKN - DIRL1_ARATH -
10 Fugue 45.2917% -47 - C2 -4ETR - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




43 97.01100%-150 - C- -M043 - -
44 93.57100%-150 - C- -M044 - -
39 90.95100%-143 - C- -M039 - -
45 89.52100%-143 - C- -M045 - -