@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-03 )
AVSNCGQVVSYLAPCITYATGRAPGPNGGCCSGVRSLNAAASTTADRQATCSCLKQQTSGMGGIKPDLVAGIPSKCGVNIPYAIKPSTDCTKVR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




30 SP3 91.1658%-103 - C2 -1FK5 5.9 NLTP_MAIZE
12 HHSearch 89.9653%-113 - C2 -1T12 - NLTP1_TOBAC -
16 HHSearch 88.9843%-117 - C2 -1SIY - NLTP1_VIGRR -
11 HHSearch 88.3359%-102 - C2 -1AFH - NLTP_MAIZE -
15 HHSearch 85.2944%-105 - C2 -1BWO - NLTP1_WHEAT -
14 HHSearch 85.2849%-109 - C2 -2ALG 3.5 NLTP1_PRUPE
24 HHSearch 53.3820%-137 - C2 -1BEA - ITRF_MAIZE -
25 HHSearch 49.7120%-110 - C2 -1SM7 - ? -
17 HHSearch 48.3923% -88 - C2 -2RKN - DIRL1_ARATH -
29 HHSearch 45.5118% -80 - C2 -1W2Q - CONG_ARAHY -
21 HHSearch 45.5015%-100 - C2 -1S6D - 2SS8_HELAN -
2 Fugue 45.4326% -72 - C2 -2RKN - DIRL1_ARATH -
4 Fugue 43.8814% -60 - C2 -1W2Q - CONG_ARAHY -
22 HHSearch 42.9015% -88 - C2 -1B1U - IAAT_ELECO -
6 Fugue 41.7127% -89 - C2 -1L6H - NLTPX_ORYSJ -
26 HHSearch 41.6820% -59 - C2 -3OB4 - ? -
35 SP3 41.4313% -44 - C2 -1DLY - TRHN1_CHLMO -
3 Fugue 41.1813% -54 - C2 -4HR1 - ? -
19 HHSearch 40.5928% -80 - C2 -1N89 - NLT2G_WHEAT -
27 HHSearch 38.9420% -87 - C2 -1PSY - 2SS_RICCO -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




44 35.60100% 6 - C- -M044 - -
47 34.94100% 18 - C- -M047 - -
46 34.91100% 16 - C- -M046 - -
40 32.41100% 7 - C- -M040 - -