@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-04 )
AITCGTVTVSLAPCLNYLKKGGPVPPACCNGIKSLNAAAKTTADRQAACNCLKTASTSIAGINLSYASSLPGKCGVNVPYKISPSTDCSKVQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
11 HHSearch 96.9262%-121 - C4 -2ALG 3.7 NLTP1_PRUPE
13 HHSearch 93.9064%-115 - C4 -1T12 - NLTP1_TOBAC -
15 HHSearch 93.4454%-123 - C4 -1SIY - NLTP1_VIGRR -
30 SP3 91.3654%-117 - C4 -1FK5 4.5 NLTP_MAIZE
16 HHSearch 90.3147%-123 - C4 -1BWO 4.4 NLTP1_WHEAT
12 HHSearch 86.8954%-109 - C4 -1AFH - NLTP_MAIZE -
29 HHSearch 64.1220%-141 - C4 -1HSS - IAA1_WHEAT -
25 HHSearch 60.5629%-121 - C4 -1SM7 - ? -
35 SP3 59.2719%-130 * C4 *1HSS - IAA1_WHEAT -
26 HHSearch 58.8725%-109 - C4 -1S6D - 2SS8_HELAN -
17 HHSearch 58.6024%-105 - C4 -2RKN - DIRL1_ARATH -
2 Fugue 58.0327% -85 - C4 -2RKN - DIRL1_ARATH -
23 HHSearch 56.7519%-132 - C4 -1BEA - ITRF_MAIZE -
6 Fugue 54.8917% -33 - C4 -1PSY - 2SS_RICCO -
20 HHSearch 50.6216%-109 - C4 -1B1U - IAAT_ELECO -
24 HHSearch 49.7623% -73 - C4 -1PSY - 2SS_RICCO -
38 SP3 49.6120% -51 - C3 -1BS0 - BIOF_ECOLI -
39 SP3 49.4516%-108 - C4 -1QPO - NADC_MYCTU -
3 Fugue 47.5823% -84 - C4 -1L6H - NLTPX_ORYSJ -
4 Fugue 46.7723% -50 - C4 -4HLB - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
40 98.48100%-134 - C- -M040 - -
47 97.99100%-137 - C- -M047 - -
44 94.84100%-131 - C- -M044 - -
45 94.22100%-129 - C- -M045 - -