@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-04 )
AVTCGQVTSSLAPCIGYLTGNGAGGVPPGCCGGIKSLNSAAQTTPDRQAACKCIKSAAAGISGINYGIASGPPGKCGVNIPYKISPSTDCNSVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




17 HHSearch 94.9565%-109 - C3 -1T12 - NLTP1_TOBAC -
11 SP3 94.4859%-107 - C3 -1FK5 4.8 NLTP_MAIZE
19 HHSearch 93.5756%-115 - C3 -1SIY - NLTP1_VIGRR -
16 HHSearch 91.5660% -98 - C3 -1AFH - NLTP_MAIZE -
15 HHSearch 91.4561%-107 - C3 -2ALG 4.0 NLTP1_PRUPE
20 HHSearch 89.5044%-114 - C3 -1BWO 3.8 NLTP1_WHEAT
29 HHSearch 59.4526%-108 - C3 -1SM7 - ? -
7 Fugue 59.3823% -78 - C3 -1S6D - 2SS8_HELAN -
28 HHSearch 56.5618%-116 - C3 -1BEA - ITRF_MAIZE -
21 HHSearch 54.5122% -82 - C3 -2RKN - DIRL1_ARATH -
27 HHSearch 52.4215%-118 - C3 -1B1U - IAAT_ELECO -
5 Fugue 51.1118%-103 - C3 -1L6H - NLTPX_ORYSJ -
2 Fugue 50.4122% -79 - C3 -2RKN - DIRL1_ARATH -
31 HHSearch 49.0924% -68 - C3 -1PSY - 2SS_RICCO -
25 HHSearch 42.4322% -84 - C3 -1S6D - 2SS8_HELAN -
4 Fugue 37.6612% -43 - C3 -1W2Q - CONG_ARAHY -
8 Fugue 36.7018% -47 - C3 -4HLB - ? -
12 SP3 34.7712% -81 - C2 -1EHX - ? -
22 HHSearch 34.4623% -74 - C3 -1L6H - NLTPX_ORYSJ -
23 HHSearch 34.2925% -57 - C3 -1N89 - NLT2G_WHEAT -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




34 100.00100%-124 - C- -M034 - -
36 98.90100%-128 - C- -M036 - -
39 90.48100%-108 - C- -M039 - -
37 89.55100%-115 - C- -M037 - -