@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-04 )
AVTCGQVTSSLAPCIGYLTGNGAGGVPPGCCGGIKSLNSAAQTTPDRQAACKCIKSAAAGISGINYGIASGLPGKCGVNIPYKISPSTDCNSVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




19 HHSearch 91.3266%-124 - C2 -1T12 - NLTP1_TOBAC -
11 SP3 90.1259%-122 - C2 -1FK5 5.3 NLTP_MAIZE
21 HHSearch 89.6857%-128 - C2 -1SIY - NLTP1_VIGRR -
18 HHSearch 88.4162%-122 - C2 -2ALG 4.0 NLTP1_PRUPE
22 HHSearch 88.1044%-128 - C2 -1BWO 3.4 NLTP1_WHEAT
17 HHSearch 87.5360%-115 - C2 -1AFH - NLTP_MAIZE -
31 HHSearch 61.3728%-131 - C2 -1SM7 - ? -
5 Fugue 59.6524% -99 - C2 -1S6D - 2SS8_HELAN -
30 HHSearch 58.5420%-142 - C2 -1BEA - ITRF_MAIZE -
35 HHSearch 55.2018%-144 - C2 -1HSS - IAA1_WHEAT -
8 Fugue 51.2320% -66 - C2 -1PSY - 2SS_RICCO -
27 HHSearch 50.7924%-105 - C2 -1S6D - 2SS8_HELAN -
29 HHSearch 50.5415%-118 - C2 -1B1U - IAAT_ELECO -
33 HHSearch 50.1024% -86 - C2 -1PSY - 2SS_RICCO -
23 HHSearch 49.5523%-102 - C2 -2RKN - DIRL1_ARATH -
2 Fugue 49.1023% -98 - C2 -2RKN - DIRL1_ARATH -
6 Fugue 44.9818%-103 - C2 -1L6H - NLTPX_ORYSJ -
10 Fugue 41.6318% -79 - C2 -2Z15 - TOB1_HUMAN -
25 HHSearch 39.9225% -82 - C2 -1N89 - NLT2G_WHEAT -
4 Fugue 39.5413% -61 - C2 -1W2Q - CONG_ARAHY -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




36 94.93100%-129 - C- -M036 - -
40 94.76100%-121 - C- -M040 - -
41 93.30100%-119 - C- -M041 - -