@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-04 )
AVTCGQVTNSLAPCINYLRGSGAGAVPPGCCSGIKSLNSAAQTTPDRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
20 HHSearch 92.7963%-124 - C2 -2ALG 4.0 NLTP1_PRUPE
11 SP3 88.9257%-124 - C2 -1FK5 5.3 NLTP_MAIZE
22 HHSearch 88.8564%-128 - C2 -1T12 - NLTP1_TOBAC -
24 HHSearch 87.9356%-128 - C2 -1SIY - NLTP1_VIGRR -
21 HHSearch 86.1460%-119 - C2 -1AFH - NLTP_MAIZE -
25 HHSearch 84.6542%-134 - C2 -1BWO - NLTP1_WHEAT -
39 HHSearch 61.2821%-149 - C2 -1HSS - IAA1_WHEAT -
34 HHSearch 61.1326%-137 - C2 -1SM7 - ? -
33 HHSearch 58.0220%-144 - C2 -1BEA - ITRF_MAIZE -
8 Fugue 55.7620%-124 - C2 -1HSS - IAA1_WHEAT -
6 Fugue 53.8023%-100 - C2 -1S6D - 2SS8_HELAN -
29 HHSearch 51.3718%-120 - C2 -1B1U - IAAT_ELECO -
26 HHSearch 49.2524%-101 - C2 -2RKN - DIRL1_ARATH -
2 Fugue 48.5725% -98 - C2 -2RKN - DIRL1_ARATH -
40 HHSearch 46.3519%-111 - C2 -2LVF - ? -
9 Fugue 46.1820%-104 - C2 -1L6H - NLTPX_ORYSJ -
31 HHSearch 45.4022%-115 - C2 -1S6D - 2SS8_HELAN -
18 SP3 45.0513%-125 - C2 -1F1Z - TNSA_ECOLX -
36 HHSearch 44.7225% -88 - C2 -1PSY - 2SS_RICCO -
7 Fugue 43.8522% -69 - C2 -1PSY - 2SS_RICCO -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
48 95.07100%-136 - C- -M048 - -
47 93.88100%-123 - C- -M047 - -
41 93.10100%-126 - C- -M041 - -