@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-04 )
AVASCGQVVSYLAPCIGYAMGRERAPGGGCCTGVRSLNAAAATPADRQATCTCLKQQTSGMGGIKPDLVAGIPSKCGVNIPYAISPRTDCSKVR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
11 SP3 93.0757%-106 - C2 -1FK5 5.9 NLTP_MAIZE
21 HHSearch 92.0658%-109 - C2 -1AFH - NLTP_MAIZE -
22 HHSearch 91.5154%-115 - C2 -1T12 - NLTP1_TOBAC -
25 HHSearch 87.4643%-122 - C2 -1SIY - NLTP1_VIGRR -
24 HHSearch 85.9149%-115 - C2 -2ALG 3.5 NLTP1_PRUPE
26 HHSearch 85.0444%-113 - C2 -1BWO - NLTP1_WHEAT -
7 Fugue 51.3619% -66 - C2 -1PSY - 2SS_RICCO -
5 Fugue 50.6829% -98 - C2 -1L6H - NLTPX_ORYSJ -
27 HHSearch 50.4023% -91 - C2 -2RKN - DIRL1_ARATH -
36 HHSearch 49.5419%-118 - C2 -1SM7 - ? -
2 Fugue 49.2226% -79 - C2 -2RKN - DIRL1_ARATH -
19 SP3 48.5315%-110 - C2 -1HSS - IAA1_WHEAT -
38 HHSearch 48.1721% -88 - C2 -1W2Q - CONG_ARAHY -
34 HHSearch 48.1618%-129 - C2 -1BEA - ITRF_MAIZE -
35 HHSearch 46.0520% -65 - C2 -3OB4 - ? -
18 SP3 46.0015%-100 - C2 -1QPO - NADC_MYCTU -
16 SP3 45.1321% -87 - C2 -1L6H - NLTPX_ORYSJ -
37 HHSearch 44.8221% -99 - C2 -1PSY - 2SS_RICCO -
6 Fugue 44.3614% -70 - C2 -1W2Q - CONG_ARAHY -
31 HHSearch 44.1616%-101 - C2 -1S6D - 2SS8_HELAN -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
44 45.64100% 0 - C- -M044 - -
46 44.50100% -4 - C- -M046 - -
40 43.51100% -2 - C- -M040 - -
42 38.11100% -10 - C- -M042 - -